scFoundation
scFoundation cell-type annotation pipeline reported in the primary table; fitting/configuration details unextracted.
Overview
scFoundation cell-type annotation pipeline reported in the primary table; fitting/configuration details unextracted.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
2 evaluations · 2 metric rows. Different protocols are not a single leaderboard.
Filter evaluations
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Pipeline: scFoundation | Protocol: scFoundation cell-type annotation comparison Segerstolpe: Segerstolpe cell-type annotation Dataset subset: Segerstolpe subset used in scFoundation Supplementary Table4 (scFoundation cell-type annotation comparison split) | 0.914 macro_f1 fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · source checkedMethods, coverage and sourceCell-type annotation evaluated by unweighted mean of cell-type F1 scores. Each class F1=TP/(TP+0.5*(FP+FN)), defined in Supplementary Note3. Exact dataset release, split manifest, fitting and preprocessing remain unextracted. Aggregation: Not reported scFoundation primary supplement, Table4 · Supplementary Table4, PDF p16, row scFoundation, column Segerstolpe |
| Pipeline: scFoundation | Protocol: scFoundation cell-type annotation comparison Zheng68K: Zheng68K cell-type annotation Dataset subset: Zheng68K subset used in scFoundation Supplementary Table4 (scFoundation cell-type annotation comparison split) | 0.736 macro_f1 fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · source checkedMethods, coverage and sourcescFoundation on scFoundation cell-type annotation comparison Zheng68K: Zheng68K cell-type annotation Cell-type annotation evaluated by unweighted mean of cell-type F1 scores. Each class F1=TP/(TP+0.5*(FP+FN)), defined in Supplementary Note3. Exact dataset release, split manifest, fitting and preprocessing remain unextracted. Aggregation: Not reported scFoundation primary supplement, Table4 · Supplementary Table4, PDF p16, row scFoundation, column Zheng68K |
Source checking is not independent reproduction. Release 2026-09-23-2b89723c6dd9.
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How it works, versions and access
Underlying model: scFoundation. Results on this page belong to this pipeline and its evaluated settings.
Strengths, limitations and unresolved questions
Evidence
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Evidence table
Inspect claims, sources and review details
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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: uses model catalog-model-scfoundation Individual claims | scFoundation primary supplement, Table4 Supplementary Table4, PDF p16, row scFoundation Version: 10.1038/s41592-024-02305-7 publisher supplement | source checked automated source review · 2026-09-23 Audit detailsSource-backed evaluated identity only; no independent reproduction. Field: Claim: scfoundation-2024-supp-table4-method-scfoundation-catalog-model-scfoundation-identity-claim Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
View linked audit checks and correction history
Release 2026-09-23-2b89723c6dd9 · Record review: source checked
1 source records and release history
- scFoundation primary supplement, Table4 · Original source · 10.1038/s41592-024-02305-7 publisher supplement
Technical metadata and extraction receipts
Stable ID: scfoundation-2024-supp-table4-method-scfoundation
- areas
- cells-spatial-multiomics
- source locator
- Supplementary Table4, PDF p16, row scFoundation
- missing metadata
- checkpoint revision: unreported; parameters: unextracted
Related records
- uses model: scFoundation
- model: scFoundation on scFoundation cell-type annotation comparison Segerstolpe: Segerstolpe cell-type annotation
- model: scFoundation on scFoundation cell-type annotation comparison Zheng68K: Zheng68K cell-type annotation
- subject: scFoundation: uses model catalog-model-scfoundation