BEELINE 2020 Figure 2 · LL · {}
Source-specific evaluation. Input conditions: {}. No equivalence to other releases, protocols or model families is inferred.
Published comparisons
Each figure keeps its source, protocol, dataset and metric together. Results from different protocols are shown separately, without a pooled ranking.
BEELINE 2020 Figure 2 · LL · {}: AUPRC Ratio
AUPRC Ratio (ratio) · Higher values are better for this metric.
Complete selected source table is retained across source-order panels. These point estimates do not establish statistical significance or a universal ranking.
- SINCERITIES · Configuration · Author-reported evaluation10.44809409
- SCRIBE · Configuration · Author-reported evaluation4.71928059
- SINGE · Configuration · Author-reported evaluation2.895290569
- PPCOR · Configuration · Author-reported evaluation7.715984682
- PIDC · Configuration · Author-reported evaluation8.390999842
- GENIE3 · Configuration · Author-reported evaluation5.619324385
- LEAP · Configuration · Author-reported evaluation7.408954071
- GRNBOOST2 · Configuration · Author-reported evaluation6.160198366
- GRISLI · Configuration · Author-reported evaluation2.561625325
- GRNVBEM · Configuration · Author-reported evaluation7.644011116
- SCNS · Configuration · Author-reported evaluation3.420323869
- SCODE · Configuration · Author-reported evaluation1.244995561
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 3, column 4 through Figure 2 source CSV row 14, column 4Values, uncertainty and evidence
| Tested entity | Printed value | Uncertainty | Evidence |
|---|---|---|---|
| SINCERITIES · Configuration | 10.44809409 ratio | status: unreported | Author-reported evaluation · source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 3, column 4 |
| SCRIBE · Configuration | 4.71928059 ratio | status: unreported | Author-reported evaluation · source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 4, column 4 |
| SINGE · Configuration | 2.895290569 ratio | status: unreported | Author-reported evaluation · source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 5, column 4 |
| PPCOR · Configuration | 7.715984682 ratio | status: unreported | Author-reported evaluation · source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 6, column 4 |
| PIDC · Configuration | 8.390999842 ratio | status: unreported | Author-reported evaluation · source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 7, column 4 |
| GENIE3 · Configuration | 5.619324385 ratio | status: unreported | Author-reported evaluation · source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 8, column 4 |
| LEAP · Configuration | 7.408954071 ratio | status: unreported | Author-reported evaluation · source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 9, column 4 |
| GRNBOOST2 · Configuration | 6.160198366 ratio | status: unreported | Author-reported evaluation · source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 10, column 4 |
| GRISLI · Configuration | 2.561625325 ratio | status: unreported | Author-reported evaluation · source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 11, column 4 |
| GRNVBEM · Configuration | 7.644011116 ratio | status: unreported | Author-reported evaluation · source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 12, column 4 |
| SCNS · Configuration | 3.420323869 ratio | status: unreported | Author-reported evaluation · source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 13, column 4 |
| SCODE · Configuration | 1.244995561 ratio | status: unreported | Author-reported evaluation · source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 14, column 4 |
Scope and limitations
- Source-specific evaluation. Input conditions: {}. No equivalence to other releases, protocols or model families is inferred.
- Across-dataset stability is median pairwise top-k edge-set Jaccard index (paper Online Methods), not Spearman correlation. Not an independent experimental run.
- Missing source cells and quarantined conflicts are recorded in acquisition and audit tables. Per-result scoring denominators may be unreported.
Source transcription and grouping reviewed by automated source review on 2026-09-19. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-19-eb6149e5d766 · 12 evaluations · 24 metric rows. Different protocols are not a single leaderboard. Charts retain each source table’s protocol and dataset.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| GRNBOOST2 · BEELINE 2020 Figure 2 · LL BEELINE 2020 Figure 2 Author-reported evaluation · Evaluation metadata: discovered | ||
| 6.160198366 AUPRC Ratio Unit: ratio · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 10, column 4 Source checking is not independent reproduction. |
| 0.44 Stability Across Datasets Unit: fraction · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 10, column 10 Source checking is not independent reproduction. |
| GENIE3 · BEELINE 2020 Figure 2 · LL BEELINE 2020 Figure 2 Author-reported evaluation · Evaluation metadata: discovered | ||
| 5.619324385 AUPRC Ratio Unit: ratio · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 8, column 4 Source checking is not independent reproduction. |
| 0.714285714 Stability Across Datasets Unit: fraction · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 8, column 10 Source checking is not independent reproduction. |
| SCODE · BEELINE 2020 Figure 2 · LL BEELINE 2020 Figure 2 Author-reported evaluation · Evaluation metadata: discovered | ||
| 1.244995561 AUPRC Ratio Unit: ratio · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 14, column 4 Source checking is not independent reproduction. |
| 0.714285714 Stability Across Datasets Unit: fraction · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 14, column 10 Source checking is not independent reproduction. |
| SCNS · BEELINE 2020 Figure 2 · LL BEELINE 2020 Figure 2 Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.55 Stability Across Datasets Unit: fraction · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 13, column 10 Source checking is not independent reproduction. |
| 3.420323869 AUPRC Ratio Unit: ratio · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 13, column 4 Source checking is not independent reproduction. |
| LEAP · BEELINE 2020 Figure 2 · LL BEELINE 2020 Figure 2 Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.565217391 Stability Across Datasets Unit: fraction · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 9, column 10 Source checking is not independent reproduction. |
| 7.408954071 AUPRC Ratio Unit: ratio · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 9, column 4 Source checking is not independent reproduction. |
| GRISLI · BEELINE 2020 Figure 2 · LL BEELINE 2020 Figure 2 Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.24137931 Stability Across Datasets Unit: fraction · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 11, column 10 Source checking is not independent reproduction. |
| 2.561625325 AUPRC Ratio Unit: ratio · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 11, column 4 Source checking is not independent reproduction. |
| SINGE · BEELINE 2020 Figure 2 · LL BEELINE 2020 Figure 2 Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.090909091 Stability Across Datasets Unit: fraction · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 5, column 10 Source checking is not independent reproduction. |
| 2.895290569 AUPRC Ratio Unit: ratio · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 5, column 4 Source checking is not independent reproduction. |
| PIDC · BEELINE 2020 Figure 2 · LL BEELINE 2020 Figure 2 Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.5 Stability Across Datasets Unit: fraction · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 7, column 10 Source checking is not independent reproduction. |
| 8.390999842 AUPRC Ratio Unit: ratio · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 7, column 4 Source checking is not independent reproduction. |
| GRNVBEM · BEELINE 2020 Figure 2 · LL BEELINE 2020 Figure 2 Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.805555556 Stability Across Datasets Unit: fraction · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 12, column 10 Source checking is not independent reproduction. |
| 7.644011116 AUPRC Ratio Unit: ratio · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 12, column 4 Source checking is not independent reproduction. |
| SINCERITIES · BEELINE 2020 Figure 2 · LL BEELINE 2020 Figure 2 Author-reported evaluation · Evaluation metadata: discovered | ||
| 10.44809409 AUPRC Ratio Unit: ratio · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 3, column 4 Source checking is not independent reproduction. |
| 0.285714286 Stability Across Datasets Unit: fraction · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 3, column 10 Source checking is not independent reproduction. |
| PPCOR · BEELINE 2020 Figure 2 · LL BEELINE 2020 Figure 2 Author-reported evaluation · Evaluation metadata: discovered | ||
| 7.715984682 AUPRC Ratio Unit: ratio · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 6, column 4 Source checking is not independent reproduction. |
| 0.636363636 Stability Across Datasets Unit: fraction · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 6, column 10 Source checking is not independent reproduction. |
| SCRIBE · BEELINE 2020 Figure 2 · LL BEELINE 2020 Figure 2 Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.2 Stability Across Datasets Unit: fraction · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 4, column 10 Source checking is not independent reproduction. |
| 4.71928059 AUPRC Ratio Unit: ratio · Direction: higher Aggregation: Median across source-described simulation datasets | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 2 source CSV row 4, column 4 Source checking is not independent reproduction. |
Overview
Source-specific evaluation. Input conditions: {}. No equivalence to other releases, protocols or model families is inferred.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- PPCOR · BEELINE 2020 Figure 2 · LL
- GRISLI · BEELINE 2020 Figure 2 · LL
- SCRIBE · BEELINE 2020 Figure 2 · LL
- SCNS · BEELINE 2020 Figure 2 · LL
- SINCERITIES · BEELINE 2020 Figure 2 · LL
- GRNVBEM · BEELINE 2020 Figure 2 · LL
- LEAP · BEELINE 2020 Figure 2 · LL
- PIDC · BEELINE 2020 Figure 2 · LL
- SINGE · BEELINE 2020 Figure 2 · LL
- GRNBOOST2 · BEELINE 2020 Figure 2 · LL
- GENIE3 · BEELINE 2020 Figure 2 · LL
- SCODE · BEELINE 2020 Figure 2 · LL
Run instructions
No runnable recipe has been reviewed for this protocol. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-beeline Individual claims | BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 Figure 2 source CSV row 3, column 4 Version: 10.1038/s41592-019-0690-6 source data published 2020 | source checked ai assisted source review · 2026-09-19 Audit detailsField: Claim: acquired-membership-1ab6bed20a44a045e01d Source artifact SHA-256: Hash scope: Exact downloaded bytes, before optional gzip storage |
Sources and history
View linked audit checks and correction history
Release 2026-09-19-eb6149e5d766 · Record review: discovered
1 source records and release history
- BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Original source · 10.1038/s41592-019-0690-6 source data published 2020
Technical metadata and extraction receipts
Stable ID: acquired-protocol-d66bbf2b3dd743f2db47
- source locator
- Figure 2 source CSV row 3, column 4
- procedure
- BEELINE 2020 Figure 2
- comparison panels
- id: acquired-figure-0d7ed9feeba1621a7088; title: BEELINE 2020 Figure 2 · LL · {}: AUPRC Ratio; protocol id: acquired-protocol-d66bbf2b3dd743f2db47; dataset id: acquired-dataset-eb76cb4054f5ff595c00; metric: AUPRC Ratio; unit: ratio; direction: higher; result ids: acquired-result-c1537cb2796f18daec0c; acquired-result-f060603fbad6633f72b1; acquired-result-e9f843b9837de1d7bc56; acquired-result-ced7a67f4be61979650a; acquired-result-f834e133006c7a81bc2b; acquired-result-0e1a41891699df422d37; acquired-result-74e99a190fee57a0c089; acquired-result-00e625b4d7a146df7c2a; acquired-result-7b88bc36b72c5fcaa248; acquired-result-e0c8bf2ea4506ec5779e; acquired-result-86dfe54192c0d4a0cda8; acquired-result-1c201842b235e4606639; source ids: acquired-source-0f6c059ffdc338b70a5c; source locator: Figure 2 source CSV row 3, column 4 through Figure 2 source CSV row 14, column 4; context: Complete selected source table is retained across source-order panels. These point estimates do not establish statistical significance or a universal ranking.; caveats: Source-specific evaluation. Input conditions: {}. No equivalence to other releases, protocols or model families is inferred.; Across-dataset stability is median pairwise top-k edge-set Jaccard index (paper Online Methods), not Spearman correlation. Not an independent experimental run.; Missing source cells and quarantined conflicts are recorded in acquisition and audit tables. Per-result scoring denominators may be unreported.; review: method: automated_source_review; date: 2026-09-19; id: acquired-figure-2e3bd5a795ac9e76b39a; title: BEELINE 2020 Figure 2 · LL · {}: Stability Across Datasets; protocol id: acquired-protocol-d66bbf2b3dd743f2db47; dataset id: acquired-dataset-eb76cb4054f5ff595c00; metric: Stability Across Datasets; unit: fraction; direction: higher; result ids: acquired-result-d52dad4b6499a9c03300; acquired-result-ed180f08bafcce319ceb; acquired-result-9bd1d98d76cfba5a6c22; acquired-result-e1b3670baa11b68b5747; acquired-result-a6eb46899735fa75d591; acquired-result-dedb612ea845c829629c; acquired-result-4f0ef29eb79cc9a36926; acquired-result-d80645f235f512313fa6; acquired-result-5d58eacdd2d20139d47c; acquired-result-b33514825aa2c1ab7d10; acquired-result-284c222b609961a9e45a; acquired-result-35df604b5a2c4f0a778a; source ids: acquired-source-0f6c059ffdc338b70a5c; source locator: Figure 2 source CSV row 3, column 10 through Figure 2 source CSV row 14, column 10; context: Complete selected source table is retained across source-order panels. These point estimates do not establish statistical significance or a universal ranking.; caveats: Source-specific evaluation. Input conditions: {}. No equivalence to other releases, protocols or model families is inferred.; Across-dataset stability is median pairwise top-k edge-set Jaccard index (paper Online Methods), not Spearman correlation. Not an independent experimental run.; Missing source cells and quarantined conflicts are recorded in acquisition and audit tables. Per-result scoring denominators may be unreported.; review: method: automated_source_review; date: 2026-09-19
- scope limitations
- Across-dataset stability is median pairwise top-k edge-set Jaccard index (paper Online Methods), not Spearman correlation. Not an independent experimental run.
Related records
- part of: BEELINE
- benchmark: PPCOR · BEELINE 2020 Figure 2 · LL
- benchmark: GRISLI · BEELINE 2020 Figure 2 · LL
- benchmark: SCRIBE · BEELINE 2020 Figure 2 · LL
- benchmark: SCNS · BEELINE 2020 Figure 2 · LL
- benchmark: SINCERITIES · BEELINE 2020 Figure 2 · LL
- benchmark: GRNVBEM · BEELINE 2020 Figure 2 · LL
- benchmark: LEAP · BEELINE 2020 Figure 2 · LL
- benchmark: PIDC · BEELINE 2020 Figure 2 · LL
- benchmark: SINGE · BEELINE 2020 Figure 2 · LL
- benchmark: GRNBOOST2 · BEELINE 2020 Figure 2 · LL
- benchmark: GENIE3 · BEELINE 2020 Figure 2 · LL
- benchmark: SCODE · BEELINE 2020 Figure 2 · LL
- subject: BEELINE 2020 Figure 2: benchmark membership