Strengths and considerations
No source-reviewed explanatory claims are recorded here yet.
GlycanML Immuno · Table 3, p. 8. Author-reported single-task models on the same held-out task; not a cross-paper ranking. Taxonomy, immunogenicity and glycosylation: motif-frequency K-means cluster allocation 8:1:1. Interaction: MMseqs2 protein clusters at minimum identity 0.5 allocated 8:1:1. Exact counts are attached to each column.
Explanatory profile: limited source coverage · Automated source review, 2026-09-17. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
| Property | Description and evidence |
|---|---|
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Splits | Not extracted or verified for this record. |
| Allowed inputs | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Metrics | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Author-reported single-task models on the same held-out task; not a cross-paper ranking. Taxonomy, immunogenicity and glycosylation: motif-frequency K-means cluster allocation 8:1:1. Interaction: MMseqs2 protein clusters at minimum identity 0.5 allocated 8:1:1. Exact counts are attached to each column.
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
These source-backed links do not make different protocols or scores interchangeable.
Each evaluation records what was tested and under which conditions.
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies.
AUPRC (dimensionless) · Higher values are better for this metric.
Author-reported single-task models on the same held-out task; not a cross-paper ranking. Taxonomy, immunogenicity and glycosylation: motif-frequency K-means cluster allocation 8:1:1. Interaction: MMseqs2 protein clusters at minimum identity 0.5 allocated 8:1:1. Exact counts are attached to each column.
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, p. 8, Immuno| Tested entity | Printed value | Uncertainty | Evidence |
|---|---|---|---|
| Shallow CNN · Configuration | 0.776(0.267) dimensionless | type: standard_deviation; value: 0.267; n: 3; unit: same_as_metric | Author-reported evaluation · source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Shallow CNN, column Immuno |
| ResNet · Configuration | 0.754(0.124) dimensionless | type: standard_deviation; value: 0.124; n: 3; unit: same_as_metric | Author-reported evaluation · source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row ResNet, column Immuno |
| LSTM · Configuration | 0.862(0.016) dimensionless | type: standard_deviation; value: 0.016; n: 3; unit: same_as_metric | Author-reported evaluation · source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row LSTM, column Immuno |
| Transformer · Configuration | 0.729(0.069) dimensionless | type: standard_deviation; value: 0.069; n: 3; unit: same_as_metric | Author-reported evaluation · source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Transformer, column Immuno |
| GCN · Configuration | 0.688(0.023) dimensionless | type: standard_deviation; value: 0.023; n: 3; unit: same_as_metric | Author-reported evaluation · source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row GCN, column Immuno |
| GAT · Configuration | 0.685(0.053) dimensionless | type: standard_deviation; value: 0.053; n: 3; unit: same_as_metric | Author-reported evaluation · source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row GAT, column Immuno |
| GIN · Configuration | 0.716(0.051) dimensionless | type: standard_deviation; value: 0.051; n: 3; unit: same_as_metric | Author-reported evaluation · source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row GIN, column Immuno |
| MPNN · Configuration | 0.674(0.119) dimensionless | type: standard_deviation; value: 0.119; n: 3; unit: same_as_metric | Author-reported evaluation · source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row MPNN, column Immuno |
| RGCN · Configuration | 0.780(0.006) dimensionless | type: standard_deviation; value: 0.006; n: 3; unit: same_as_metric | Author-reported evaluation · source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row RGCN, column Immuno |
| CompGCN · Configuration | 0.692(0.006) dimensionless | type: standard_deviation; value: 0.006; n: 3; unit: same_as_metric | Author-reported evaluation · source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row CompGCN, column Immuno |
Source transcription and grouping reviewed by automated source review on 2026-09-17. These experiments were not independently reproduced by rewire.
Release 2026-09-17-d277315f7d76 · 10 evaluations · 10 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| LSTM: SugarBase immunogenicity · Immuno Configuration: LSTMProtocol: SugarBase immunogenicity · Immuno (GlycanML immunogenicity prediction)Dataset: SugarBase immunogenicity · Immuno Author-reported single-task models on the same held-out task; not a cross-paper ranking. Taxonomy, immunogenicity and glycosylation: motif-frequency K-means cluster allocation 8:1:1. Interaction: MMseqs2 protein clusters at minimum identity 0.5 allocated 8:1:1. Exact counts are attached to each column. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.862(0.016) AUPRC Unit: dimensionless · Direction: higher | Uncertainty: type: standard deviation; value: 0.016; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row LSTM, column Immuno Source checking is not independent reproduction. |
| ResNet: SugarBase immunogenicity · Immuno Configuration: ResNetProtocol: SugarBase immunogenicity · Immuno (GlycanML immunogenicity prediction)Dataset: SugarBase immunogenicity · Immuno Author-reported single-task models on the same held-out task; not a cross-paper ranking. Taxonomy, immunogenicity and glycosylation: motif-frequency K-means cluster allocation 8:1:1. Interaction: MMseqs2 protein clusters at minimum identity 0.5 allocated 8:1:1. Exact counts are attached to each column. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.754(0.124) AUPRC Unit: dimensionless · Direction: higher | Uncertainty: type: standard deviation; value: 0.124; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row ResNet, column Immuno Source checking is not independent reproduction. |
| RGCN: SugarBase immunogenicity · Immuno Configuration: RGCNProtocol: SugarBase immunogenicity · Immuno (GlycanML immunogenicity prediction)Dataset: SugarBase immunogenicity · Immuno Author-reported single-task models on the same held-out task; not a cross-paper ranking. Taxonomy, immunogenicity and glycosylation: motif-frequency K-means cluster allocation 8:1:1. Interaction: MMseqs2 protein clusters at minimum identity 0.5 allocated 8:1:1. Exact counts are attached to each column. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.780(0.006) AUPRC Unit: dimensionless · Direction: higher | Uncertainty: type: standard deviation; value: 0.006; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row RGCN, column Immuno Source checking is not independent reproduction. |
| MPNN: SugarBase immunogenicity · Immuno Configuration: MPNNProtocol: SugarBase immunogenicity · Immuno (GlycanML immunogenicity prediction)Dataset: SugarBase immunogenicity · Immuno Author-reported single-task models on the same held-out task; not a cross-paper ranking. Taxonomy, immunogenicity and glycosylation: motif-frequency K-means cluster allocation 8:1:1. Interaction: MMseqs2 protein clusters at minimum identity 0.5 allocated 8:1:1. Exact counts are attached to each column. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.674(0.119) AUPRC Unit: dimensionless · Direction: higher | Uncertainty: type: standard deviation; value: 0.119; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row MPNN, column Immuno Source checking is not independent reproduction. |
| CompGCN: SugarBase immunogenicity · Immuno Configuration: CompGCNProtocol: SugarBase immunogenicity · Immuno (GlycanML immunogenicity prediction)Dataset: SugarBase immunogenicity · Immuno Author-reported single-task models on the same held-out task; not a cross-paper ranking. Taxonomy, immunogenicity and glycosylation: motif-frequency K-means cluster allocation 8:1:1. Interaction: MMseqs2 protein clusters at minimum identity 0.5 allocated 8:1:1. Exact counts are attached to each column. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.692(0.006) AUPRC Unit: dimensionless · Direction: higher | Uncertainty: type: standard deviation; value: 0.006; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row CompGCN, column Immuno Source checking is not independent reproduction. |
| Transformer: SugarBase immunogenicity · Immuno Configuration: TransformerProtocol: SugarBase immunogenicity · Immuno (GlycanML immunogenicity prediction)Dataset: SugarBase immunogenicity · Immuno Author-reported single-task models on the same held-out task; not a cross-paper ranking. Taxonomy, immunogenicity and glycosylation: motif-frequency K-means cluster allocation 8:1:1. Interaction: MMseqs2 protein clusters at minimum identity 0.5 allocated 8:1:1. Exact counts are attached to each column. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.729(0.069) AUPRC Unit: dimensionless · Direction: higher | Uncertainty: type: standard deviation; value: 0.069; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Transformer, column Immuno Source checking is not independent reproduction. |
| GIN: SugarBase immunogenicity · Immuno Configuration: GINProtocol: SugarBase immunogenicity · Immuno (GlycanML immunogenicity prediction)Dataset: SugarBase immunogenicity · Immuno Author-reported single-task models on the same held-out task; not a cross-paper ranking. Taxonomy, immunogenicity and glycosylation: motif-frequency K-means cluster allocation 8:1:1. Interaction: MMseqs2 protein clusters at minimum identity 0.5 allocated 8:1:1. Exact counts are attached to each column. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.716(0.051) AUPRC Unit: dimensionless · Direction: higher | Uncertainty: type: standard deviation; value: 0.051; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row GIN, column Immuno Source checking is not independent reproduction. |
| GCN: SugarBase immunogenicity · Immuno Configuration: GCNProtocol: SugarBase immunogenicity · Immuno (GlycanML immunogenicity prediction)Dataset: SugarBase immunogenicity · Immuno Author-reported single-task models on the same held-out task; not a cross-paper ranking. Taxonomy, immunogenicity and glycosylation: motif-frequency K-means cluster allocation 8:1:1. Interaction: MMseqs2 protein clusters at minimum identity 0.5 allocated 8:1:1. Exact counts are attached to each column. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.688(0.023) AUPRC Unit: dimensionless · Direction: higher | Uncertainty: type: standard deviation; value: 0.023; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row GCN, column Immuno Source checking is not independent reproduction. |
| GAT: SugarBase immunogenicity · Immuno Configuration: GATProtocol: SugarBase immunogenicity · Immuno (GlycanML immunogenicity prediction)Dataset: SugarBase immunogenicity · Immuno Author-reported single-task models on the same held-out task; not a cross-paper ranking. Taxonomy, immunogenicity and glycosylation: motif-frequency K-means cluster allocation 8:1:1. Interaction: MMseqs2 protein clusters at minimum identity 0.5 allocated 8:1:1. Exact counts are attached to each column. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.685(0.053) AUPRC Unit: dimensionless · Direction: higher | Uncertainty: type: standard deviation; value: 0.053; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row GAT, column Immuno Source checking is not independent reproduction. |
| Shallow CNN: SugarBase immunogenicity · Immuno Configuration: Shallow CNNProtocol: SugarBase immunogenicity · Immuno (GlycanML immunogenicity prediction)Dataset: SugarBase immunogenicity · Immuno Author-reported single-task models on the same held-out task; not a cross-paper ranking. Taxonomy, immunogenicity and glycosylation: motif-frequency K-means cluster allocation 8:1:1. Interaction: MMseqs2 protein clusters at minimum identity 0.5 allocated 8:1:1. Exact counts are attached to each column. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.776(0.267) AUPRC Unit: dimensionless · Direction: higher | Uncertainty: type: standard deviation; value: 0.267; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Shallow CNN, column Immuno Source checking is not independent reproduction. |
Last literature check: 2026-09-17. Primary-paper within-study comparison; numerical results not independently reproduced.
| Paper or primary resource | Version | Reference |
|---|---|---|
| GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning | arXiv:2405.16206v1, 2024-05-25 | Read source |
complete comparison extracted
No source-reviewed explanatory claims are recorded here yet.
No source-reviewed explanatory claims are recorded here yet.
Primary-source transcription and separate automated review. No human sign-off or experimental reproduction.
Stable record: paper-protocol-705c3995af4e74e425Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
4 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Evaluation in this paper Author-reported single-task models on the same held-out task; not a cross-paper ranking. Taxonomy, immunogenicity and glycosylation: motif-frequency K-means cluster allocation 8:1:1. Interaction: MMseqs2 protein clusters at minimum identity 0.5 allocated 8:1:1. Exact counts are attached to each column. Individual claims | GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning Table 3, p. 8, Immuno Version: arXiv:2405.16206v1, 2024-05-25 | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Introduction GlycanML Immuno · Table 3, p. 8. Author-reported single-task models on the same held-out task; not a cross-paper ranking. Taxonomy, immunogenicity and glycosylation: motif-frequency K-means cluster allocation 8:1:1. Interaction: MMseqs2 protein clusters at minimum identity 0.5 allocated 8:1:1. Exact counts are attached to each column. Individual claims | GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning Table 3, p. 8, Immuno Version: arXiv:2405.16206v1, 2024-05-25 | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: evaluates task discovery-benchmark-glycanml-immunogenicity-prediction Individual claims | GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning Table 3, p. 8, Immuno Version: arXiv:2405.16206v1, 2024-05-25 | source checked automated source review · 2026-09-17 Audit detailsField: Claim: paper-claim-b17176c99f67cfc285 Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: part of discovery-benchmark-glycanml Individual claims | GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning Table 3, p. 8, Immuno Version: arXiv:2405.16206v1, 2024-05-25 | source checked automated source review · 2026-09-17 Audit detailsField: Claim: paper-claim-078c2ab996e6a51a6a Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Release 2026-09-17-d277315f7d76 · Record review: needs review
Stable ID: paper-protocol-705c3995af4e74e425