0.63 PAS_10000_average_auprc
AlphaGenome distilled all-fold student: Polyadenylation-QTL causality, PAS 10000 average auprc
- Tested model
- AlphaGenome distilled all-fold student
- Model family
- AlphaGenome
- Task or benchmark
- Polyadenylation-QTL causality (AlphaGenome paper)
- Dataset
- Polyadenylation-QTL causality: evaluated data subset
- Procedure
- Summarize predicted RNA coverage near PASs, derive the largest allelic change in proximal-versus-distal usage, average tracks and classify positive versus matched negative variants. Unscored variants receive zero as specified by the paper.
- Evaluation
- AlphaGenome distilled all-fold student: Polyadenylation-QTL causality
- Evidence
- Author-reported evaluation · source checkedAlphaGenome Nature 2026 supplementary comparison tables · 'Suppl Table 4 Variant performan'!M9
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-17-a757f4af4277 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| AlphaGenome distilled all-fold student: Polyadenylation-QTL causality Model: AlphaGenome distilled all-fold student · Benchmark: Polyadenylation-QTL causality (AlphaGenome paper) · Dataset: Polyadenylation-QTL causality: evaluated data subset Summarize predicted RNA coverage near PASs, derive the largest allelic change in proximal-versus-distal usage, average tracks and classify positive versus matched negative variants. Unscored variants receive zero as specified by the paper. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.63 PAS_10000_average_auprc Unit: dimensionless · Direction: higher Aggregation: Average auPRC over100 random positive-to-negative matching permutations; Table4 endpoint is PAS_10000. | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAlphaGenome Nature 2026 supplementary comparison tables · 'Suppl Table 4 Variant performan'!M9 Source checking is not independent reproduction. |
Evidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 0.63 Individual claims | AlphaGenome Nature 2026 supplementary comparison tables 'Suppl Table 4 Variant performan'!M9 Version: Nature version of record, 28 January 2026 | source checked OOXML extraction and separate automated primary-source review · 2026-09-17 author reported Audit detailsChecked against a second extraction. Fixed-format display and exact stored decimals preserved separately. No experiment rerun. Field: Source artifact SHA-256: Hash scope: SHA-256 of exact retrieved original artifact bytes Format: xlsx Extraction artifact SHA-256: |
Sources and history
Release 2026-09-17-a757f4af4277 · Record review: source checked
- AlphaGenome Nature 2026 supplementary comparison tables · Original source · Nature version of record, 28 January 2026
- AlphaGenome Nature 2026 supplementary methods · Original source · Supplement to Nature version of record, 28 January 2026; content hash pinned
- alphagenome: Journal full-text XML · Original source · Retrieved page snapshot; no immutable publisher revision supplied
Technical metadata and extraction receipts
Stable ID: alphagenome-2026-result-1e88bdedfa8823be
- areas
- dna-genomes
- printed value
- 0.63
- printed value basis
- Workbook number format 0.00
- numeric value
- 0.62942299999999995
- raw xml value
- 0.62942299999999995
- workbook number format
- 0.00
- metric
- PAS_10000_average_auprc
- metric direction
- higher
- unit
- dimensionless
- aggregation
- Average auPRC over100 random positive-to-negative matching permutations; Table4 endpoint is PAS_10000.
- uncertainty
- Not reported
- scored count
- Not reported
- eligible count
- Not reported
- source cells
- 'Suppl Table 4 Variant performan'!M9
- source locator
- 'Suppl Table 4 Variant performan'!M9
- review
- method: OOXML extraction and separate automated primary-source review; date: 2026-09-17; artifact sha256: 833cb78b6ae6fe39415cfff296ac00c48d800326139f13eb307531a1cc133154; retrieval url: https://media.springernature.com/original/springer-static/esm/art%3A10.1038%2Fs41586-025-10014-0/MediaObjects/41586_2025_10014_MOESM3_ESM.xlsx; note: Checked against a second extraction. Fixed-format display and exact stored decimals preserved separately. No experiment rerun.
- missing metadata
- uncertainty: unreported; scored count: unextracted; eligible count: unextracted; seeds: unreported
- source warnings
- None recorded