0.79 Per-cell type @4kb pearsonr
AlphaGenome fold-0 contact-map model, bilinearly resized to Orca 4 kb bins: chromatin contact-map prediction, Per-cell type @4kb pearsonr
- Tested model
- AlphaGenome fold-0 contact-map model, bilinearly resized to Orca 4 kb bins
- Model family
- AlphaGenome
- Task or benchmark
- chromatin contact-map prediction (AlphaGenome paper)
- Dataset
- chromatin contact-map prediction: evaluated data subset
- Procedure
- Compare predicted and observed contact maps for each held-out interval and cell type.
- Evaluation
- AlphaGenome fold-0 contact-map model, bilinearly resized to Orca 4 kb bins: chromatin contact-map prediction
- Evidence
- Author-reported evaluation · source checkedAlphaGenome Nature 2026 supplementary comparison tables · 'Suppl Table 3 Track performance'!K40
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-17-a757f4af4277 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| AlphaGenome fold-0 contact-map model, bilinearly resized to Orca 4 kb bins: chromatin contact-map prediction Model: AlphaGenome fold-0 contact-map model, bilinearly resized to Orca 4 kb bins · Benchmark: chromatin contact-map prediction (AlphaGenome paper) · Dataset: chromatin contact-map prediction: evaluated data subset Compare predicted and observed contact maps for each held-out interval and cell type. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.79 Per-cell type
@4kb pearsonr Unit: correlation · Direction: higher Aggregation: Mean Pearson correlation across held-out interval evaluations; cell types remain explicit before reporting the summary. | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAlphaGenome Nature 2026 supplementary comparison tables · 'Suppl Table 3 Track performance'!K40 Source checking is not independent reproduction. |
Evidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 0.79 Individual claims | AlphaGenome Nature 2026 supplementary comparison tables 'Suppl Table 3 Track performance'!K40 Version: Nature version of record, 28 January 2026 | source checked OOXML extraction and separate automated primary-source review · 2026-09-17 author reported Audit detailsChecked against a second extraction. Fixed-format display and exact stored decimals preserved separately. No experiment rerun. Field: Source artifact SHA-256: Hash scope: SHA-256 of exact retrieved original artifact bytes Format: xlsx Extraction artifact SHA-256: |
Sources and history
Release 2026-09-17-a757f4af4277 · Record review: source checked
- AlphaGenome Nature 2026 supplementary comparison tables · Original source · Nature version of record, 28 January 2026
- AlphaGenome Nature 2026 supplementary methods · Original source · Supplement to Nature version of record, 28 January 2026; content hash pinned
- alphagenome: Journal full-text XML · Original source · Retrieved page snapshot; no immutable publisher revision supplied
Technical metadata and extraction receipts
Stable ID: alphagenome-2026-result-35c44723e5113150
- areas
- dna-genomes
- printed value
- 0.79
- printed value basis
- Workbook number format 0.00
- numeric value
- 0.78693299999999999
- raw xml value
- 0.78693299999999999
- workbook number format
- 0.00
- metric
- Per-cell type @4kb pearsonr
- metric direction
- higher
- unit
- correlation
- aggregation
- Mean Pearson correlation across held-out interval evaluations; cell types remain explicit before reporting the summary.
- uncertainty
- Not reported
- scored count
- Not reported
- eligible count
- Not reported
- source cells
- 'Suppl Table 3 Track performance'!K40
- source locator
- 'Suppl Table 3 Track performance'!K40
- review
- method: OOXML extraction and separate automated primary-source review; date: 2026-09-17; artifact sha256: 833cb78b6ae6fe39415cfff296ac00c48d800326139f13eb307531a1cc133154; retrieval url: https://media.springernature.com/original/springer-static/esm/art%3A10.1038%2Fs41586-025-10014-0/MediaObjects/41586_2025_10014_MOESM3_ESM.xlsx; note: Checked against a second extraction. Fixed-format display and exact stored decimals preserved separately. No experiment rerun.
- missing metadata
- uncertainty: unreported; scored count: unextracted; eligible count: unextracted; seeds: unreported
- source warnings
- None recorded