0.294 Cell-type difference @4kb pearsonr
Orca (paper Table 3): Cell-type difference in chromatin contact-map prediction, Cell-type difference @4kb pearsonr
- Tested model
- Orca (paper Table 3)
- Task or benchmark
- Cell-type difference in chromatin contact-map prediction (AlphaGenome paper)
- Dataset
- Cell-type difference in chromatin contact-map prediction: evaluated data subset
- Procedure
- Reimplement the Orca H1-hESC minus HFF difference evaluation on the same held-out windows.
- Evaluation
- Orca (paper Table 3): Cell-type difference in chromatin contact-map prediction
- Evidence
- Author-reported evaluation · source checkedAlphaGenome Nature 2026 supplementary comparison tables · 'Suppl Table 3 Track performance'!J41
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-17-a757f4af4277 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Orca (paper Table 3): Cell-type difference in chromatin contact-map prediction Model: Orca (paper Table 3) · Benchmark: Cell-type difference in chromatin contact-map prediction (AlphaGenome paper) · Dataset: Cell-type difference in chromatin contact-map prediction: evaluated data subset Reimplement the Orca H1-hESC minus HFF difference evaluation on the same held-out windows. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.294 Cell-type difference
@4kb pearsonr Unit: correlation · Direction: higher Aggregation: Mean Pearson correlation across held-out interval evaluations; the difference-map endpoint is distinct from individual-cell-type accuracy. | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAlphaGenome Nature 2026 supplementary comparison tables · 'Suppl Table 3 Track performance'!J41 Source checking is not independent reproduction. |
Evidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 0.294 Individual claims | AlphaGenome Nature 2026 supplementary comparison tables 'Suppl Table 3 Track performance'!J41 Version: Nature version of record, 28 January 2026 | source checked OOXML extraction and separate automated primary-source review · 2026-09-17 author reported Audit detailsChecked against a second extraction. Fixed-format display and exact stored decimals preserved separately. No experiment rerun. Field: Source artifact SHA-256: Hash scope: SHA-256 of exact retrieved original artifact bytes Format: xlsx Extraction artifact SHA-256: |
Sources and history
Release 2026-09-17-a757f4af4277 · Record review: source checked
- AlphaGenome Nature 2026 supplementary comparison tables · Original source · Nature version of record, 28 January 2026
- AlphaGenome Nature 2026 supplementary methods · Original source · Supplement to Nature version of record, 28 January 2026; content hash pinned
- alphagenome: Journal full-text XML · Original source · Retrieved page snapshot; no immutable publisher revision supplied
Technical metadata and extraction receipts
Stable ID: alphagenome-2026-result-da6facb94a4f13eb
- areas
- dna-genomes
- printed value
- 0.294
- printed value basis
- Workbook number format 0.000
- numeric value
- 0.29358299999999998
- raw xml value
- 0.29358299999999998
- workbook number format
- 0.000
- metric
- Cell-type difference @4kb pearsonr
- metric direction
- higher
- unit
- correlation
- aggregation
- Mean Pearson correlation across held-out interval evaluations; the difference-map endpoint is distinct from individual-cell-type accuracy.
- uncertainty
- Not reported
- scored count
- Not reported
- eligible count
- Not reported
- source cells
- 'Suppl Table 3 Track performance'!J41
- source locator
- 'Suppl Table 3 Track performance'!J41
- review
- method: OOXML extraction and separate automated primary-source review; date: 2026-09-17; artifact sha256: 833cb78b6ae6fe39415cfff296ac00c48d800326139f13eb307531a1cc133154; retrieval url: https://media.springernature.com/original/springer-static/esm/art%3A10.1038%2Fs41586-025-10014-0/MediaObjects/41586_2025_10014_MOESM3_ESM.xlsx; note: Checked against a second extraction. Fixed-format display and exact stored decimals preserved separately. No experiment rerun.
- missing metadata
- uncertainty: unreported; scored count: unextracted; eligible count: unextracted; seeds: unreported
- source warnings
- None recorded