result · source checked
52.3 Median F1
RNAfold · Median F1 · DEBFold TestSetβ
- Tested model
- RNAfold
- Task or benchmark
- RNA secondary structure
- Dataset
- DEBFold TestSetβ
- Procedure
- Median F1 on the prepared TestSetβ.
- Evaluation
- RNAfold: RNA secondary structure
- Evidence
- Independent external evaluation · source checkedDEBFold: Computational Identification of RNA Secondary Structures for Sequences across Structural Families Using Deep Learning · Table 1, RNAfold row, TestSetβ F1 (%) column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| RNAfold: RNA secondary structure Median F1 on the prepared TestSetβ. Independent external evaluation · Evaluation metadata: needs review | ||
| 52.3 Median F1 Unit: % · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedDEBFold: Computational Identification of RNA Secondary Structures for Sequences across Structural Families Using Deep Learning · Table 1, RNAfold row, TestSetβ F1 (%) column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: source checked
- DEBFold: Computational Identification of RNA Secondary Structures for Sequences across Structural Families Using Deep Learning · Original source · PMC11094721.1
Technical metadata and extraction receipts
Stable ID: lit-016
- areas
- rna-transcriptomes
- tasks
- RNA secondary structure
- printed value
- 52.3
- numeric value
- 52.3
- metric
- Median F1
- metric direction
- unknown
- unit
- %
- uncertainty
- Not reported
- source locator
- Table 1, RNAfold row, TestSetβ F1 (%) column
- review
- method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:41:16.511166+00:00; notes: TestSet beta is the second four-column block. F1 (%) is its first column; caption reports test-set median F1. This verifies the central score at its source location, not every metadata field or an experimental reproduction.; evidence: {"table_xml_id": "tbl1", "row_cells": ["RNAfold", "63.5", "53.9", "82.9", "8", "52.3", "39.9", "81.2", "8", "77.9", "83.3", "73.2", "1", "63.5", "8"], "selected_cell_zero_based": 5, "selected_cell_xml": "<td style=\"border:none;\" align=\"left\" colspan=\"1\" rowspan=\"1\">52.3</td>", "caption": "Test Set Median F1 Score Performance Comparison between DEBFold and Other Available Thermodynamics-Based RNA Secondary Structure Prediction Tools on the Three Prepared Test Setsa"}; artifact sha256: e8f960eafb7f00edfdd81d4fb75c6de838e9b872b7e18875fc7a5bff2a2f72b3; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC11094721/fullTextXML
- legacy id
- lit-016
- legacy row
- id: lit-016; paper id: debfold-2024; domain id: rna-transcriptomes; task: RNA secondary structure; model: RNAfold; model version: Not reported; dataset: DEBFold TestSetβ; dataset version: Not reported; split: Not reported; metric: Median F1; value: 52.3; unit: %; uncertainty: Not reported; protocol: Median F1 on the prepared TestSetβ.; source locator: Table 1, RNAfold row, TestSetβ F1 (%) column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11094721/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:25:00Z
- missing metadata
- model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract
Related records
- evaluation: RNAfold: RNA secondary structure
- subject: Reported Median F1 for RNAfold