Result

0.90 Sensitivity

ProkBERT-mini: Sensitivity on E. coli sigma70 independent promoter test

Tested configuration: ProkBERT-mini
Protocol: E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction)
Dataset: E. coli sigma70 promoter dataset
Procedure: Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training.
Evaluation: ProkBERT-mini: E. coli sigma70 promoter prediction
Evidence: Author-reported evaluation · source checkedProkBERT family: genomic language models for microbiome applications · Table 3, row ProkBERT-mini, column Sensitivity; XML row2 column4

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Evaluation results

Release 2026-09-17-d277315f7d76 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.

Evaluation setupMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
ProkBERT-mini: E. coli sigma70 promoter prediction Configuration: ProkBERT-miniProtocol: E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction)Dataset: E. coli sigma70 promoter dataset Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training. Author-reported evaluation · Evaluation metadata: needs review
0.90 Sensitivity Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedProkBERT family: genomic language models for microbiome applications · Table 3, row ProkBERT-mini, column Sensitivity; XML row2 column4 Source checking is not independent reproduction.

Evidence table

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-d277315f7d76
Property and statement	Original source and location	Review and provenance
Reported result 0.90 Individual claims	ProkBERT family: genomic language models for microbiome applications Original source ↗ Table 3, row ProkBERT-mini, column Sensitivity; XML row2 column4 Version: PMC10810988.1 Retrieved: 2026-09-17T07:56:14.890826+00:00	source checked Primary-table transcription and separate automated source review · 2026-09-17 author reported Audit details Source checked does not mean experimentally reproduced. Field: `attributes.printed_value` Source artifact SHA-256: `8610e2a54aa877c8dc565a9cdb6e82099f284c5e0907a52cab18d994ea732436` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact

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Sources and history

Release 2026-09-17-d277315f7d76 · Record review: source checked

ProkBERT family: genomic language models for microbiome applications · Original source · PMC10810988.1
ProkBERT family: genomic language models for microbiome applications · Original source · PMC10810988.1

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Technical metadata and extraction receipts

Stable ID: paper-result-26d268756b8a662fd8

areas: microbes-communities
tasks: E. coli sigma70 promoter prediction
printed value: 0.90
numeric value: 0.90
metric: Sensitivity
metric direction: higher
unit: fraction
uncertainty: Not reported
eligible count: Not reported
scored count: Not reported
reported population: Not reported
source locator: Table 3, row ProkBERT-mini, column Sensitivity; XML row2 column4
source occurrences: source id: part2-prokbert-2024; locator: Table 3, row ProkBERT-mini, column Sensitivity; XML row2 column4
review: method: Primary-table transcription and separate automated source review; date: 2026-09-17; note: Source checked does not mean experimentally reproduced.
missing metadata: scored count: unreported; eligible count: unextracted; checkpoint revision: unextracted; uncertainty: unreported

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evaluation: ProkBERT-mini: E. coli sigma70 promoter prediction

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