Result

0.721 MCC

Phigaro: MCC on Genome-wide prophage detection

Tested configuration: Phigaro
Protocol: Genome-wide prophage detection (Genome-wide prophage detection)
Dataset: LAMBDA genome-wide prophage test
Procedure: Scan complete genomes with overlapping windows and postprocess predictions into prophage regions. Genome-wide metrics are computed at region level and macro-averaged across genomes. Filtered gLM pipelines include normalization, smoothing, clustering and size filtering; these are not standalone encoder scores. 80 bacterial genomes,47 species,four phyla;386 annotated prophage locations.
Evaluation: Phigaro: Genome-wide prophage detection
Evidence: Author-reported evaluation · source checkedLAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Table 5., row Phigaro, column MCC; XML row6 column7

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Evaluation results

Release 2026-09-17-d277315f7d76 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.

Evaluation setupMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
Phigaro: Genome-wide prophage detection Configuration: PhigaroProtocol: Genome-wide prophage detection (Genome-wide prophage detection)Dataset: LAMBDA genome-wide prophage test Scan complete genomes with overlapping windows and postprocess predictions into prophage regions. Genome-wide metrics are computed at region level and macro-averaged across genomes. Filtered gLM pipelines include normalization, smoothing, clustering and size filtering; these are not standalone encoder scores. 80 bacterial genomes,47 species,four phyla;386 annotated prophage locations. Author-reported evaluation · Evaluation metadata: needs review
0.721 MCC Unit: unitless · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedLAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Table 5., row Phigaro, column MCC; XML row6 column7 Source checking is not independent reproduction.

Evidence table

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-d277315f7d76
Property and statement	Original source and location	Review and provenance
Reported result 0.721 Individual claims	LAMBDA: A Prophage Detection Benchmark for Genomic Language Models Original source ↗ Table 5., row Phigaro, column MCC; XML row6 column7 Version: PMC13041943.1 Retrieved: 2026-09-17T07:56:21.006973+00:00	source checked Primary-table transcription and separate automated source review · 2026-09-17 author reported Audit details Source checked does not mean experimentally reproduced. Field: `attributes.printed_value` Source artifact SHA-256: `22c2e218e87dce757907f6086a0e2ad37c13f785b34fff5bea7cfa1a6c276b16` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact

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Sources and history

Release 2026-09-17-d277315f7d76 · Record review: source checked

LAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Original source · PMC13041943.1

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Technical metadata and extraction receipts

Stable ID: paper-result-4615d60b969151525b

areas: microbes-communities
tasks: Genome-wide prophage detection
printed value: 0.721
numeric value: 0.721
metric: MCC
metric direction: higher
unit: unitless
uncertainty: Not reported
eligible count: Not reported
scored count: Not reported
reported population: Not reported
source locator: Table 5., row Phigaro, column MCC; XML row6 column7
source occurrences: source id: part2-lambda-prophage-2026; locator: Table 5., row Phigaro, column MCC; XML row6 column7
review: method: Primary-table transcription and separate automated source review; date: 2026-09-17; note: Source checked does not mean experimentally reproduced.
missing metadata: scored count: unreported; eligible count: unextracted; checkpoint revision: unextracted; uncertainty: unreported

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evaluation: Phigaro: Genome-wide prophage detection

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