Result

0.9254 AUROC

DanQ: AUROC on TF-cell-type binding on held-out chromosomes8and9

Tested configuration: DanQ
Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction)
Dataset: genome-wide TF binding sites
Procedure: Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test.
Evaluation: DanQ: TF-cell-type binding on held-out chromosomes8and9
Evidence: Independent external evaluation · source checkedIntegrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row DanQ, column AUROC; XML row3 column2

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Evaluation results

Release 2026-09-17-d277315f7d76 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.

Evaluation setupMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
DanQ: TF-cell-type binding on held-out chromosomes8and9 Configuration: DanQProtocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction)Dataset: genome-wide TF binding sites Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Independent external evaluation · Evaluation metadata: needs review
0.9254 AUROC Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedIntegrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row DanQ, column AUROC; XML row3 column2 Source checking is not independent reproduction.

Evidence table

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-d277315f7d76
Property and statement	Original source and location	Review and provenance
Reported result 0.9254 Individual claims	Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Original source ↗ Table 2., row DanQ, column AUROC; XML row3 column2 Version: version of record Retrieved: 2026-09-17T07:56:18.711445+00:00	source checked Primary-table transcription and separate automated source review · 2026-09-17 independent paper Audit details Source checked does not mean experimentally reproduced. Field: `attributes.printed_value` Source artifact SHA-256: `5d777f5925e941b7d087035d5d87e79ef75ae8d6456a770ffe8c527da566fee0` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact

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Sources and history

Release 2026-09-17-d277315f7d76 · Record review: source checked

Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Original source · version of record

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Technical metadata and extraction receipts

Stable ID: paper-result-5c446c8d7902f5ff2b

areas: molecular-interactions
tasks: transcription-factor DNA binding-site prediction
printed value: 0.9254
numeric value: 0.9254
metric: AUROC
metric direction: higher
unit: fraction
uncertainty: Not reported
eligible count: Not reported
scored count: Not reported
reported population: Not reported
source locator: Table 2., row DanQ, column AUROC; XML row3 column2
source occurrences: source id: part2-transbind-2026; locator: Table 2., row DanQ, column AUROC; XML row3 column2
review: method: Primary-table transcription and separate automated source review; date: 2026-09-17; note: Source checked does not mean experimentally reproduced.
missing metadata: scored count: unreported; eligible count: unextracted; checkpoint revision: unextracted; uncertainty: unreported

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evaluation: DanQ: TF-cell-type binding on held-out chromosomes8and9

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