Result

0.2960 AUPR

finetuned DNABERT-2: AUPR on TF-cell-type binding on held-out chromosomes8and9

Tested configuration: finetuned DNABERT-2
Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction)
Dataset: genome-wide TF binding sites
Procedure: Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test.
Evaluation: finetuned DNABERT-2: TF-cell-type binding on held-out chromosomes8and9
Evidence: Independent external evaluation · source checkedIntegrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row finetuned DNABERT-2, column AUPR; XML row5 column3

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Evaluation results

Release 2026-09-17-d277315f7d76 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.

Evaluation setupMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
finetuned DNABERT-2: TF-cell-type binding on held-out chromosomes8and9 Configuration: finetuned DNABERT-2Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction)Dataset: genome-wide TF binding sites Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Independent external evaluation · Evaluation metadata: needs review
0.2960 AUPR Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedIntegrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row finetuned DNABERT-2, column AUPR; XML row5 column3 Source checking is not independent reproduction.

Evidence table

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-d277315f7d76
Property and statement	Original source and location	Review and provenance
Reported result 0.2960 Individual claims	Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Original source ↗ Table 2., row finetuned DNABERT-2, column AUPR; XML row5 column3 Version: version of record Retrieved: 2026-09-17T07:56:18.711445+00:00	source checked Primary-table transcription and separate automated source review · 2026-09-17 independent paper Audit details Source checked does not mean experimentally reproduced. Field: `attributes.printed_value` Source artifact SHA-256: `5d777f5925e941b7d087035d5d87e79ef75ae8d6456a770ffe8c527da566fee0` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact

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Sources and history

Release 2026-09-17-d277315f7d76 · Record review: source checked

Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Original source · version of record

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Technical metadata and extraction receipts

Stable ID: paper-result-ec2a592fbd35502a5b

areas: molecular-interactions
tasks: transcription-factor DNA binding-site prediction
printed value: 0.2960
numeric value: 0.2960
metric: AUPR
metric direction: higher
unit: fraction
uncertainty: Not reported
eligible count: Not reported
scored count: Not reported
reported population: Not reported
source locator: Table 2., row finetuned DNABERT-2, column AUPR; XML row5 column3
source occurrences: source id: part2-transbind-2026; locator: Table 2., row finetuned DNABERT-2, column AUPR; XML row5 column3
review: method: Primary-table transcription and separate automated source review; date: 2026-09-17; note: Source checked does not mean experimentally reproduced.
missing metadata: scored count: unreported; eligible count: unextracted; checkpoint revision: unextracted; uncertainty: unreported

Related records

evaluation: finetuned DNABERT-2: TF-cell-type binding on held-out chromosomes8and9

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