0.389 spearman
HMM · ProteinGym ZS-INDEL-SPEARMAN-ALL · Spearman
- Tested configuration
- HMM
- Task
- ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman
- Dataset subset
- ProteinGym indel DMS assays (ProteinGym split)
- Procedure
- Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated.
- Evaluation
- HMM on ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman
- Evidence
- Author-reported evaluation · source checkedProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(HMM), column(Zero-shot indels, all assays, Spearman)
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Methods and reproduction
ProteinGym evaluation of HMM on Zero-shot indels, all assays, Spearman, scored with Spearman.
- task
- ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman
- configuration
- HMM
- dataset subset
- ProteinGym indel DMS assays (ProteinGym split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- Spearman
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation results
Release 2026-09-17-134cd1815de8 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| HMM on ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman Configuration: HMMTask: ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, SpearmanDataset subset: ProteinGym indel DMS assays (ProteinGym split) Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.389 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(HMM), column(Zero-shot indels, all assays, Spearman) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 0.389 Individual claims | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 4, row(HMM), column(Zero-shot indels, all assays, Spearman) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | source checked Deterministic parse of the pinned PDF text layer, reading each table from its heading row down to its own caption · 2026-09-18 author reported Audit detailsSource checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. Extraction artifact SHA-256: |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: proteingym-result-hmm-zs-indel-spearman-all-spearman
- areas
- proteins-complexes
- tasks
- Zero-shot indels, all assays, Spearman
- metric
- spearman
- metric direction
- higher
- unit
- correlation
- printed value
- 0.389
- numeric value
- 0.389
- uncertainty
- Not reported
- source locator
- Table 4, row(HMM), column(Zero-shot indels, all assays, Spearman)
- missing metadata
- denominator: unextracted; seeds: unreported
- review
- method: Deterministic parse of the pinned PDF text layer, reading each table from its heading row down to its own caption; reviewer: Codex research agent; no human review claimed; date: 2026-09-18; artifact sha256: a3b08cc4a6befd64620cf0f287d78d55a36dc2639955f52c5655f83833c50104; retrieval url: https://papers.nips.cc/paper/2023/file/cac723e5ff29f65e3fcbb0739ae91bee-Paper-Datasets_and_Benchmarks.pdf; notes: Source checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied.