0.04508654312652131 average_precision
DNABERT-2 117M · frozen pair embeddings · average_precision
- Tested model
- DNABERT-2 117M · frozen pair embeddings
- Task or benchmark
- MFASS v2
- Dataset
- MFASS v2 eligible assay cohort
- Procedure
- Masked mean of frozen last hidden states for 170 bp reference and mutant sequences; concatenate reference and mutant-minus-reference embeddings; fixed balanced L2 logistic head trained only on the MFASS training split.
- Evaluation
- DNABERT-2 117M · frozen pair embeddings on MFASS v2
- Evidence
- Rewire evaluation · reproducedMFASS v2 pinned rewire artifacts · benchmarks/mfass/results/dnabert2-117m-frozen-pair-logreg.json :: average_precision
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: reproduced. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| DNABERT-2 117M · frozen pair embeddings on MFASS v2 Model: DNABERT-2 117M · frozen pair embeddings · Benchmark: MFASS v2 · Dataset: MFASS v2 eligible assay cohort Masked mean of frozen last hidden states for 170 bp reference and mutant sequences; concatenate reference and mutant-minus-reference embeddings; fixed balanced L2 logistic head trained only on the MFASS training split. Rewire evaluation · Evaluation metadata: reproduced | ||
| 0.04508654312652131 average_precision Unit: fraction · Direction: higher | Uncertainty: Point estimate; see paired-comparison artifacts. Coverage (scored/eligible): 8324/8324 | reproducedMFASS v2 pinned rewire artifacts · benchmarks/mfass/results/dnabert2-117m-frozen-pair-logreg.json :: average_precision Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: reproduced
- MFASS v2 pinned rewire artifacts · Original source · bee9133b83f3aedaf2bbb9013f1875515845607e
Technical metadata and extraction receipts
Stable ID: rewire-result-dnabert2-117m-frozen-pair-logreg-average-precision
- areas
- dna-genomes
- printed value
- 0.04508654312652131
- numeric value
- 0.04508654312652131
- metric
- average_precision
- metric direction
- higher
- unit
- fraction
- uncertainty
- Not reported
- source locator
- benchmarks/mfass/results/dnabert2-117m-frozen-pair-logreg.json :: average_precision
- review
- method: existing_run_import; reviewer: rewire documented MFASS v2 run; reviewed at: 2026-09-16T10:50:02Z; notes: Imported existing documented own-run record, not a newly executed reproduction.
- coverage
- 8324/8324
- missing metadata
- uncertainty: Point estimate; see paired-comparison artifacts.