BEACON APA: Alternative polyadenylation isoform prediction
Alternative polyadenylation isoform prediction. Reg at sequence level, scored with R2. Dataset APARENT; train/validation/test 145,463/33,170/49,755.
Overview
Alternative polyadenylation isoform prediction. Reg at sequence level, scored with R2. Dataset APARENT; train/validation/test 145,463/33,170/49,755.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- BEACON-B on BEACON APA: Alternative polyadenylation isoform prediction
- BEACON-B512 on BEACON APA: Alternative polyadenylation isoform prediction
- CNN on BEACON APA: Alternative polyadenylation isoform prediction
- LSTM on BEACON APA: Alternative polyadenylation isoform prediction
- ResNet on BEACON APA: Alternative polyadenylation isoform prediction
- RNA-FM on BEACON APA: Alternative polyadenylation isoform prediction
- RNA-MSM on BEACON APA: Alternative polyadenylation isoform prediction
- RNABERT on BEACON APA: Alternative polyadenylation isoform prediction
- Splice-H510 on BEACON APA: Alternative polyadenylation isoform prediction
- Splice-MS1024 on BEACON APA: Alternative polyadenylation isoform prediction
- Splice-MS510 on BEACON APA: Alternative polyadenylation isoform prediction
- UTR-LM-MRL on BEACON APA: Alternative polyadenylation isoform prediction
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Published comparisons
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.
BEACON APA: Alternative polyadenylation isoform prediction
r2 (percent) · Higher values are better for this metric.
Every method in BEACON Table 3 on Alternative polyadenylation isoform prediction, scored with R2 on APARENT with the split 145,463/33,170/49,755.
- CNN · Method · Author-reported evaluation50.93(0.17)
- ResNet · Method · Author-reported evaluation56.45(0.94)
- LSTM · Method · Author-reported evaluation67.03(0.86)
- RNA-FM · Configuration · Author-reported evaluation70.32(0.97)
- RNABERT · Configuration · Author-reported evaluation57.66(2.11)
- RNA-MSM · Configuration · Author-reported evaluation70.40(1.12)
- Splice-H510 · Configuration · Author-reported evaluation58.65(2.34)
- Splice-MS510 · Configuration · Author-reported evaluation52.46(17.36)
- Splice-MS1024 · Configuration · Author-reported evaluation60.03(3.42)
- UTR-LM-MRL · Configuration · Author-reported evaluation64.99(4.90)
- UTR-LM-TE&EL · Configuration · Author-reported evaluation72.09(0.82)
- UTRBERT-3mer · Configuration · Author-reported evaluation69.52(4.56)
- UTRBERT-4mer · Configuration · Author-reported evaluation72.71(0.85)
- UTRBERT-5mer · Configuration · Author-reported evaluation72.70(1.77)
- UTRBERT-6mer · Configuration · Author-reported evaluation71.17(2.30)
- BEACON-B · Configuration · Author-reported evaluation70.59(0.91)
- BEACON-B512 · Configuration · Author-reported evaluation72.00(0.17)
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,column(APA)Values, uncertainty and evidence
| Tested entity | Printed value | Uncertainty | Evidence |
|---|---|---|---|
| CNN · Method | 50.93(0.17) percent | type: standard_deviation; value: 0.17 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(CNN),column(APA) |
| ResNet · Method | 56.45(0.94) percent | type: standard_deviation; value: 0.94 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(ResNet),column(APA) |
| LSTM · Method | 67.03(0.86) percent | type: standard_deviation; value: 0.86 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(LSTM),column(APA) |
| RNA-FM · Configuration | 70.32(0.97) percent | type: standard_deviation; value: 0.97 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-FM),column(APA) |
| RNABERT · Configuration | 57.66(2.11) percent | type: standard_deviation; value: 2.11 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNABERT),column(APA) |
| RNA-MSM · Configuration | 70.40(1.12) percent | type: standard_deviation; value: 1.12 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-MSM),column(APA) |
| Splice-H510 · Configuration | 58.65(2.34) percent | type: standard_deviation; value: 2.34 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-H510),column(APA) |
| Splice-MS510 · Configuration | 52.46(17.36) percent | type: standard_deviation; value: 17.36 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS510),column(APA) |
| Splice-MS1024 · Configuration | 60.03(3.42) percent | type: standard_deviation; value: 3.42 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS1024),column(APA) |
| UTR-LM-MRL · Configuration | 64.99(4.90) percent | type: standard_deviation; value: 4.90 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-MRL),column(APA) |
| UTR-LM-TE&EL · Configuration | 72.09(0.82) percent | type: standard_deviation; value: 0.82 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-TE&EL),column(APA) |
| UTRBERT-3mer · Configuration | 69.52(4.56) percent | type: standard_deviation; value: 4.56 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-3mer),column(APA) |
| UTRBERT-4mer · Configuration | 72.71(0.85) percent | type: standard_deviation; value: 0.85 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-4mer),column(APA) |
| UTRBERT-5mer · Configuration | 72.70(1.77) percent | type: standard_deviation; value: 1.77 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-5mer),column(APA) |
| UTRBERT-6mer · Configuration | 71.17(2.30) percent | type: standard_deviation; value: 2.30 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-6mer),column(APA) |
| BEACON-B · Configuration | 70.59(0.91) percent | type: standard_deviation; value: 0.91 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B),column(APA) |
| BEACON-B512 · Configuration | 72.00(0.17) percent | type: standard_deviation; value: 0.17 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B512),column(APA) |
Scope and limitations
- Author-reported numbers, source checked but not independently reproduced.
- The Literature SOTA row is excluded: those numbers come from other papers under their own protocols.
- Metrics differ between tasks, so these figures cannot be averaged into one RNA score.
Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-17-1a18ca2c038a · 17 evaluations · 17 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| BEACON-B on BEACON APA: Alternative polyadenylation isoform prediction Configuration: BEACON-BTask: BEACON APA: Alternative polyadenylation isoform predictionDataset subset: APARENT (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Author-reported evaluation · Evaluation metadata: source checked | ||
| 70.59(0.91)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.91 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B),column(APA) Source checking is not independent reproduction. |
| BEACON-B512 on BEACON APA: Alternative polyadenylation isoform prediction Configuration: BEACON-B512Task: BEACON APA: Alternative polyadenylation isoform predictionDataset subset: APARENT (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Author-reported evaluation · Evaluation metadata: source checked | ||
| 72.00(0.17)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.17 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B512),column(APA) Source checking is not independent reproduction. |
| CNN on BEACON APA: Alternative polyadenylation isoform prediction Method: CNNTask: BEACON APA: Alternative polyadenylation isoform predictionDataset subset: APARENT (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Author-reported evaluation · Evaluation metadata: source checked | ||
| 50.93(0.17)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.17 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(CNN),column(APA) Source checking is not independent reproduction. |
| LSTM on BEACON APA: Alternative polyadenylation isoform prediction Method: LSTMTask: BEACON APA: Alternative polyadenylation isoform predictionDataset subset: APARENT (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Author-reported evaluation · Evaluation metadata: source checked | ||
| 67.03(0.86)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.86 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(LSTM),column(APA) Source checking is not independent reproduction. |
| ResNet on BEACON APA: Alternative polyadenylation isoform prediction Method: ResNetTask: BEACON APA: Alternative polyadenylation isoform predictionDataset subset: APARENT (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Author-reported evaluation · Evaluation metadata: source checked | ||
| 56.45(0.94)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.94 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(ResNet),column(APA) Source checking is not independent reproduction. |
| RNA-FM on BEACON APA: Alternative polyadenylation isoform prediction Configuration: RNA-FMTask: BEACON APA: Alternative polyadenylation isoform predictionDataset subset: APARENT (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Author-reported evaluation · Evaluation metadata: source checked | ||
| 70.32(0.97)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.97 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-FM),column(APA) Source checking is not independent reproduction. |
| RNA-MSM on BEACON APA: Alternative polyadenylation isoform prediction Configuration: RNA-MSMTask: BEACON APA: Alternative polyadenylation isoform predictionDataset subset: APARENT (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Author-reported evaluation · Evaluation metadata: source checked | ||
| 70.40(1.12)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.12 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-MSM),column(APA) Source checking is not independent reproduction. |
| RNABERT on BEACON APA: Alternative polyadenylation isoform prediction Configuration: RNABERTTask: BEACON APA: Alternative polyadenylation isoform predictionDataset subset: APARENT (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Author-reported evaluation · Evaluation metadata: source checked | ||
| 57.66(2.11)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 2.11 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNABERT),column(APA) Source checking is not independent reproduction. |
| Splice-H510 on BEACON APA: Alternative polyadenylation isoform prediction Configuration: Splice-H510Task: BEACON APA: Alternative polyadenylation isoform predictionDataset subset: APARENT (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Author-reported evaluation · Evaluation metadata: source checked | ||
| 58.65(2.34)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 2.34 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-H510),column(APA) Source checking is not independent reproduction. |
| Splice-MS1024 on BEACON APA: Alternative polyadenylation isoform prediction Configuration: Splice-MS1024Task: BEACON APA: Alternative polyadenylation isoform predictionDataset subset: APARENT (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Author-reported evaluation · Evaluation metadata: source checked | ||
| 60.03(3.42)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 3.42 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS1024),column(APA) Source checking is not independent reproduction. |
| Splice-MS510 on BEACON APA: Alternative polyadenylation isoform prediction Configuration: Splice-MS510Task: BEACON APA: Alternative polyadenylation isoform predictionDataset subset: APARENT (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Author-reported evaluation · Evaluation metadata: source checked | ||
| 52.46(17.36)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 17.36 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS510),column(APA) Source checking is not independent reproduction. |
| UTR-LM-MRL on BEACON APA: Alternative polyadenylation isoform prediction Configuration: UTR-LM-MRLTask: BEACON APA: Alternative polyadenylation isoform predictionDataset subset: APARENT (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Author-reported evaluation · Evaluation metadata: source checked | ||
| 64.99(4.90)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 4.90 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-MRL),column(APA) Source checking is not independent reproduction. |
| UTR-LM-TE&EL on BEACON APA: Alternative polyadenylation isoform prediction Configuration: UTR-LM-TE&ELTask: BEACON APA: Alternative polyadenylation isoform predictionDataset subset: APARENT (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Author-reported evaluation · Evaluation metadata: source checked | ||
| 72.09(0.82)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.82 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-TE&EL),column(APA) Source checking is not independent reproduction. |
| UTRBERT-3mer on BEACON APA: Alternative polyadenylation isoform prediction Configuration: UTRBERT-3merTask: BEACON APA: Alternative polyadenylation isoform predictionDataset subset: APARENT (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Author-reported evaluation · Evaluation metadata: source checked | ||
| 69.52(4.56)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 4.56 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-3mer),column(APA) Source checking is not independent reproduction. |
| UTRBERT-4mer on BEACON APA: Alternative polyadenylation isoform prediction Configuration: UTRBERT-4merTask: BEACON APA: Alternative polyadenylation isoform predictionDataset subset: APARENT (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Author-reported evaluation · Evaluation metadata: source checked | ||
| 72.71(0.85)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.85 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-4mer),column(APA) Source checking is not independent reproduction. |
| UTRBERT-5mer on BEACON APA: Alternative polyadenylation isoform prediction Configuration: UTRBERT-5merTask: BEACON APA: Alternative polyadenylation isoform predictionDataset subset: APARENT (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Author-reported evaluation · Evaluation metadata: source checked | ||
| 72.70(1.77)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.77 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-5mer),column(APA) Source checking is not independent reproduction. |
| UTRBERT-6mer on BEACON APA: Alternative polyadenylation isoform prediction Configuration: UTRBERT-6merTask: BEACON APA: Alternative polyadenylation isoform predictionDataset subset: APARENT (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Author-reported evaluation · Evaluation metadata: source checked | ||
| 71.17(2.30)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 2.30 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-6mer),column(APA) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-beacon Individual claims | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table1,p.6,row(APA) Version: v2, 12 December 2024 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: beacon-association-apa Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-09-17-1a18ca2c038a · Record review: source checked
1 source records and release history
- BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Original source · v2, 12 December 2024
Technical metadata and extraction receipts
Stable ID: beacon-task-apa
- areas
- rna-transcriptomes
- tasks
- Alternative polyadenylation isoform prediction
- metric
- R2
- metric direction
- higher
- task type
- Reg
- rna level
- Sequence
- dataset
- APARENT
- splits
- 145,463/33,170/49,755
- source locator
- Table1,p.6,row(APA)
- comparison panels
- id: beacon-panel-apa; title: BEACON APA: Alternative polyadenylation isoform prediction; protocol id: beacon-task-apa; dataset id: beacon-dataset-aparent; metric: r2; unit: percent; direction: higher; result ids: beacon-result-cnn-apa-r2; beacon-result-resnet-apa-r2; beacon-result-lstm-apa-r2; beacon-result-rna-fm-apa-r2; beacon-result-rnabert-apa-r2; beacon-result-rna-msm-apa-r2; beacon-result-splice-h510-apa-r2; beacon-result-splice-ms510-apa-r2; beacon-result-splice-ms1024-apa-r2; beacon-result-utr-lm-mrl-apa-r2; beacon-result-utr-lm-te-and-el-apa-r2; beacon-result-utrbert-3mer-apa-r2; beacon-result-utrbert-4mer-apa-r2; beacon-result-utrbert-5mer-apa-r2; beacon-result-utrbert-6mer-apa-r2; beacon-result-beacon-b-apa-r2; beacon-result-beacon-b512-apa-r2; source ids: source-beacon-arxiv-2406-10391; source locator: Table3,p.8,column(APA); context: Every method in BEACON Table 3 on Alternative polyadenylation isoform prediction, scored with R2 on APARENT with the split 145,463/33,170/49,755.; caveats: Author-reported numbers, source checked but not independently reproduced.; The Literature SOTA row is excluded: those numbers come from other papers under their own protocols.; Metrics differ between tasks, so these figures cannot be averaged into one RNA score.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: BEACON
- subject: BEACON APA: part of discovery-benchmark-beacon
- benchmark: BEACON-B on BEACON APA: Alternative polyadenylation isoform prediction
- benchmark: BEACON-B512 on BEACON APA: Alternative polyadenylation isoform prediction
- benchmark: CNN on BEACON APA: Alternative polyadenylation isoform prediction
- benchmark: LSTM on BEACON APA: Alternative polyadenylation isoform prediction
- benchmark: ResNet on BEACON APA: Alternative polyadenylation isoform prediction
- benchmark: RNA-FM on BEACON APA: Alternative polyadenylation isoform prediction
- benchmark: RNA-MSM on BEACON APA: Alternative polyadenylation isoform prediction
- benchmark: RNABERT on BEACON APA: Alternative polyadenylation isoform prediction
- benchmark: Splice-H510 on BEACON APA: Alternative polyadenylation isoform prediction
- benchmark: Splice-MS1024 on BEACON APA: Alternative polyadenylation isoform prediction
- benchmark: Splice-MS510 on BEACON APA: Alternative polyadenylation isoform prediction
- benchmark: UTR-LM-MRL on BEACON APA: Alternative polyadenylation isoform prediction
- benchmark: UTR-LM-TE&EL on BEACON APA: Alternative polyadenylation isoform prediction
- benchmark: UTRBERT-3mer on BEACON APA: Alternative polyadenylation isoform prediction
- benchmark: UTRBERT-4mer on BEACON APA: Alternative polyadenylation isoform prediction
- benchmark: UTRBERT-5mer on BEACON APA: Alternative polyadenylation isoform prediction
- benchmark: UTRBERT-6mer on BEACON APA: Alternative polyadenylation isoform prediction