BEACON SSP: Secondary structure prediction
Secondary structure prediction. Multi-label Cls at nucleotide level, scored with F1. Dataset bpRNA-1m; train/validation/test 10,814/1,300/1,305.
Overview
Secondary structure prediction. Multi-label Cls at nucleotide level, scored with F1. Dataset bpRNA-1m; train/validation/test 10,814/1,300/1,305.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- BEACON-B on BEACON SSP: Secondary structure prediction
- BEACON-B512 on BEACON SSP: Secondary structure prediction
- CNN on BEACON SSP: Secondary structure prediction
- LSTM on BEACON SSP: Secondary structure prediction
- ResNet on BEACON SSP: Secondary structure prediction
- RNA-FM on BEACON SSP: Secondary structure prediction
- RNA-MSM on BEACON SSP: Secondary structure prediction
- RNABERT on BEACON SSP: Secondary structure prediction
- Splice-H510 on BEACON SSP: Secondary structure prediction
- Splice-MS1024 on BEACON SSP: Secondary structure prediction
- Splice-MS510 on BEACON SSP: Secondary structure prediction
- UTR-LM-MRL on BEACON SSP: Secondary structure prediction
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Published comparisons
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.
BEACON SSP: Secondary structure prediction
f1 (percent) · Higher values are better for this metric.
Every method in BEACON Table 3 on Secondary structure prediction, scored with F1 on bpRNA-1m with the split 10,814/1,300/1,305.
- CNN · Method · Author-reported evaluation49.95(0.82)
- ResNet · Method · Author-reported evaluation57.26(3.14)
- LSTM · Method · Author-reported evaluation58.61(0.21)
- RNA-FM · Configuration · Author-reported evaluation68.50(0.54)
- RNABERT · Configuration · Author-reported evaluation57.27(0.30)
- RNA-MSM · Configuration · Author-reported evaluation57.98(0.47)
- Splice-H510 · Configuration · Author-reported evaluation64.93(0.84)
- Splice-MS510 · Configuration · Author-reported evaluation43.24(28.64)
- Splice-MS1024 · Configuration · Author-reported evaluation68.26(0.20)
- UTR-LM-MRL · Configuration · Author-reported evaluation59.71(0.30)
- UTR-LM-TE&EL · Configuration · Author-reported evaluation59.57(0.20)
- UTRBERT-3mer · Configuration · Author-reported evaluation60.37(0.47)
- UTRBERT-4mer · Configuration · Author-reported evaluation59.41(0.45)
- UTRBERT-5mer · Configuration · Author-reported evaluation47.92(8.75)
- UTRBERT-6mer · Configuration · Author-reported evaluation38.56(28.76)
- BEACON-B · Configuration · Author-reported evaluation64.18(0.44)
- BEACON-B512 · Configuration · Author-reported evaluation58.75(3.72)
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,column(SSP)Values, uncertainty and evidence
| Tested entity | Printed value | Uncertainty | Evidence |
|---|---|---|---|
| CNN · Method | 49.95(0.82) percent | type: standard_deviation; value: 0.82 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(CNN),column(SSP) |
| ResNet · Method | 57.26(3.14) percent | type: standard_deviation; value: 3.14 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(ResNet),column(SSP) |
| LSTM · Method | 58.61(0.21) percent | type: standard_deviation; value: 0.21 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(LSTM),column(SSP) |
| RNA-FM · Configuration | 68.50(0.54) percent | type: standard_deviation; value: 0.54 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-FM),column(SSP) |
| RNABERT · Configuration | 57.27(0.30) percent | type: standard_deviation; value: 0.30 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNABERT),column(SSP) |
| RNA-MSM · Configuration | 57.98(0.47) percent | type: standard_deviation; value: 0.47 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-MSM),column(SSP) |
| Splice-H510 · Configuration | 64.93(0.84) percent | type: standard_deviation; value: 0.84 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-H510),column(SSP) |
| Splice-MS510 · Configuration | 43.24(28.64) percent | type: standard_deviation; value: 28.64 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS510),column(SSP) |
| Splice-MS1024 · Configuration | 68.26(0.20) percent | type: standard_deviation; value: 0.20 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS1024),column(SSP) |
| UTR-LM-MRL · Configuration | 59.71(0.30) percent | type: standard_deviation; value: 0.30 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-MRL),column(SSP) |
| UTR-LM-TE&EL · Configuration | 59.57(0.20) percent | type: standard_deviation; value: 0.20 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-TE&EL),column(SSP) |
| UTRBERT-3mer · Configuration | 60.37(0.47) percent | type: standard_deviation; value: 0.47 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-3mer),column(SSP) |
| UTRBERT-4mer · Configuration | 59.41(0.45) percent | type: standard_deviation; value: 0.45 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-4mer),column(SSP) |
| UTRBERT-5mer · Configuration | 47.92(8.75) percent | type: standard_deviation; value: 8.75 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-5mer),column(SSP) |
| UTRBERT-6mer · Configuration | 38.56(28.76) percent | type: standard_deviation; value: 28.76 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-6mer),column(SSP) |
| BEACON-B · Configuration | 64.18(0.44) percent | type: standard_deviation; value: 0.44 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B),column(SSP) |
| BEACON-B512 · Configuration | 58.75(3.72) percent | type: standard_deviation; value: 3.72 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B512),column(SSP) |
Scope and limitations
- Author-reported numbers, source checked but not independently reproduced.
- The Literature SOTA row is excluded: those numbers come from other papers under their own protocols.
- Metrics differ between tasks, so these figures cannot be averaged into one RNA score.
Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-17-1a18ca2c038a · 17 evaluations · 17 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| BEACON-B on BEACON SSP: Secondary structure prediction Configuration: BEACON-BTask: BEACON SSP: Secondary structure predictionDataset subset: bpRNA-1m (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 10,814/1,300/1,305; dataset bpRNA-1m. Author-reported evaluation · Evaluation metadata: source checked | ||
| 64.18(0.44)% f1 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.44 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B),column(SSP) Source checking is not independent reproduction. |
| BEACON-B512 on BEACON SSP: Secondary structure prediction Configuration: BEACON-B512Task: BEACON SSP: Secondary structure predictionDataset subset: bpRNA-1m (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 10,814/1,300/1,305; dataset bpRNA-1m. Author-reported evaluation · Evaluation metadata: source checked | ||
| 58.75(3.72)% f1 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 3.72 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B512),column(SSP) Source checking is not independent reproduction. |
| CNN on BEACON SSP: Secondary structure prediction BEACON harness, fixed downstream head per task. Train/validation/test 10,814/1,300/1,305; dataset bpRNA-1m. Author-reported evaluation · Evaluation metadata: source checked | ||
| 49.95(0.82)% f1 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.82 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(CNN),column(SSP) Source checking is not independent reproduction. |
| LSTM on BEACON SSP: Secondary structure prediction BEACON harness, fixed downstream head per task. Train/validation/test 10,814/1,300/1,305; dataset bpRNA-1m. Author-reported evaluation · Evaluation metadata: source checked | ||
| 58.61(0.21)% f1 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.21 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(LSTM),column(SSP) Source checking is not independent reproduction. |
| ResNet on BEACON SSP: Secondary structure prediction Method: ResNetTask: BEACON SSP: Secondary structure predictionDataset subset: bpRNA-1m (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 10,814/1,300/1,305; dataset bpRNA-1m. Author-reported evaluation · Evaluation metadata: source checked | ||
| 57.26(3.14)% f1 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 3.14 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(ResNet),column(SSP) Source checking is not independent reproduction. |
| RNA-FM on BEACON SSP: Secondary structure prediction Configuration: RNA-FMTask: BEACON SSP: Secondary structure predictionDataset subset: bpRNA-1m (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 10,814/1,300/1,305; dataset bpRNA-1m. Author-reported evaluation · Evaluation metadata: source checked | ||
| 68.50(0.54)% f1 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.54 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-FM),column(SSP) Source checking is not independent reproduction. |
| RNA-MSM on BEACON SSP: Secondary structure prediction Configuration: RNA-MSMTask: BEACON SSP: Secondary structure predictionDataset subset: bpRNA-1m (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 10,814/1,300/1,305; dataset bpRNA-1m. Author-reported evaluation · Evaluation metadata: source checked | ||
| 57.98(0.47)% f1 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.47 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-MSM),column(SSP) Source checking is not independent reproduction. |
| RNABERT on BEACON SSP: Secondary structure prediction Configuration: RNABERTTask: BEACON SSP: Secondary structure predictionDataset subset: bpRNA-1m (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 10,814/1,300/1,305; dataset bpRNA-1m. Author-reported evaluation · Evaluation metadata: source checked | ||
| 57.27(0.30)% f1 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.30 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNABERT),column(SSP) Source checking is not independent reproduction. |
| Splice-H510 on BEACON SSP: Secondary structure prediction Configuration: Splice-H510Task: BEACON SSP: Secondary structure predictionDataset subset: bpRNA-1m (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 10,814/1,300/1,305; dataset bpRNA-1m. Author-reported evaluation · Evaluation metadata: source checked | ||
| 64.93(0.84)% f1 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.84 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-H510),column(SSP) Source checking is not independent reproduction. |
| Splice-MS1024 on BEACON SSP: Secondary structure prediction Configuration: Splice-MS1024Task: BEACON SSP: Secondary structure predictionDataset subset: bpRNA-1m (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 10,814/1,300/1,305; dataset bpRNA-1m. Author-reported evaluation · Evaluation metadata: source checked | ||
| 68.26(0.20)% f1 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.20 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS1024),column(SSP) Source checking is not independent reproduction. |
| Splice-MS510 on BEACON SSP: Secondary structure prediction Configuration: Splice-MS510Task: BEACON SSP: Secondary structure predictionDataset subset: bpRNA-1m (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 10,814/1,300/1,305; dataset bpRNA-1m. Author-reported evaluation · Evaluation metadata: source checked | ||
| 43.24(28.64)% f1 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 28.64 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS510),column(SSP) Source checking is not independent reproduction. |
| UTR-LM-MRL on BEACON SSP: Secondary structure prediction Configuration: UTR-LM-MRLTask: BEACON SSP: Secondary structure predictionDataset subset: bpRNA-1m (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 10,814/1,300/1,305; dataset bpRNA-1m. Author-reported evaluation · Evaluation metadata: source checked | ||
| 59.71(0.30)% f1 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.30 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-MRL),column(SSP) Source checking is not independent reproduction. |
| UTR-LM-TE&EL on BEACON SSP: Secondary structure prediction Configuration: UTR-LM-TE&ELTask: BEACON SSP: Secondary structure predictionDataset subset: bpRNA-1m (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 10,814/1,300/1,305; dataset bpRNA-1m. Author-reported evaluation · Evaluation metadata: source checked | ||
| 59.57(0.20)% f1 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.20 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-TE&EL),column(SSP) Source checking is not independent reproduction. |
| UTRBERT-3mer on BEACON SSP: Secondary structure prediction Configuration: UTRBERT-3merTask: BEACON SSP: Secondary structure predictionDataset subset: bpRNA-1m (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 10,814/1,300/1,305; dataset bpRNA-1m. Author-reported evaluation · Evaluation metadata: source checked | ||
| 60.37(0.47)% f1 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.47 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-3mer),column(SSP) Source checking is not independent reproduction. |
| UTRBERT-4mer on BEACON SSP: Secondary structure prediction Configuration: UTRBERT-4merTask: BEACON SSP: Secondary structure predictionDataset subset: bpRNA-1m (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 10,814/1,300/1,305; dataset bpRNA-1m. Author-reported evaluation · Evaluation metadata: source checked | ||
| 59.41(0.45)% f1 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.45 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-4mer),column(SSP) Source checking is not independent reproduction. |
| UTRBERT-5mer on BEACON SSP: Secondary structure prediction Configuration: UTRBERT-5merTask: BEACON SSP: Secondary structure predictionDataset subset: bpRNA-1m (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 10,814/1,300/1,305; dataset bpRNA-1m. Author-reported evaluation · Evaluation metadata: source checked | ||
| 47.92(8.75)% f1 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 8.75 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-5mer),column(SSP) Source checking is not independent reproduction. |
| UTRBERT-6mer on BEACON SSP: Secondary structure prediction Configuration: UTRBERT-6merTask: BEACON SSP: Secondary structure predictionDataset subset: bpRNA-1m (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 10,814/1,300/1,305; dataset bpRNA-1m. Author-reported evaluation · Evaluation metadata: source checked | ||
| 38.56(28.76)% f1 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 28.76 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-6mer),column(SSP) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-beacon Individual claims | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table1,p.6,row(SSP) Version: v2, 12 December 2024 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: beacon-association-ssp Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-09-17-1a18ca2c038a · Record review: source checked
1 source records and release history
- BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Original source · v2, 12 December 2024
Technical metadata and extraction receipts
Stable ID: beacon-task-ssp
- areas
- rna-transcriptomes
- tasks
- Secondary structure prediction
- metric
- F1
- metric direction
- higher
- task type
- Multi-label Cls
- rna level
- Nucleotide
- dataset
- bpRNA-1m
- splits
- 10,814/1,300/1,305
- source locator
- Table1,p.6,row(SSP)
- comparison panels
- id: beacon-panel-ssp; title: BEACON SSP: Secondary structure prediction; protocol id: beacon-task-ssp; dataset id: beacon-dataset-bprna-1m; metric: f1; unit: percent; direction: higher; result ids: beacon-result-cnn-ssp-f1; beacon-result-resnet-ssp-f1; beacon-result-lstm-ssp-f1; beacon-result-rna-fm-ssp-f1; beacon-result-rnabert-ssp-f1; beacon-result-rna-msm-ssp-f1; beacon-result-splice-h510-ssp-f1; beacon-result-splice-ms510-ssp-f1; beacon-result-splice-ms1024-ssp-f1; beacon-result-utr-lm-mrl-ssp-f1; beacon-result-utr-lm-te-and-el-ssp-f1; beacon-result-utrbert-3mer-ssp-f1; beacon-result-utrbert-4mer-ssp-f1; beacon-result-utrbert-5mer-ssp-f1; beacon-result-utrbert-6mer-ssp-f1; beacon-result-beacon-b-ssp-f1; beacon-result-beacon-b512-ssp-f1; source ids: source-beacon-arxiv-2406-10391; source locator: Table3,p.8,column(SSP); context: Every method in BEACON Table 3 on Secondary structure prediction, scored with F1 on bpRNA-1m with the split 10,814/1,300/1,305.; caveats: Author-reported numbers, source checked but not independently reproduced.; The Literature SOTA row is excluded: those numbers come from other papers under their own protocols.; Metrics differ between tasks, so these figures cannot be averaged into one RNA score.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: BEACON
- subject: BEACON SSP: part of discovery-benchmark-beacon
- benchmark: BEACON-B on BEACON SSP: Secondary structure prediction
- benchmark: BEACON-B512 on BEACON SSP: Secondary structure prediction
- benchmark: CNN on BEACON SSP: Secondary structure prediction
- benchmark: LSTM on BEACON SSP: Secondary structure prediction
- benchmark: ResNet on BEACON SSP: Secondary structure prediction
- benchmark: RNA-FM on BEACON SSP: Secondary structure prediction
- benchmark: RNA-MSM on BEACON SSP: Secondary structure prediction
- benchmark: RNABERT on BEACON SSP: Secondary structure prediction
- benchmark: Splice-H510 on BEACON SSP: Secondary structure prediction
- benchmark: Splice-MS1024 on BEACON SSP: Secondary structure prediction
- benchmark: Splice-MS510 on BEACON SSP: Secondary structure prediction
- benchmark: UTR-LM-MRL on BEACON SSP: Secondary structure prediction
- benchmark: UTR-LM-TE&EL on BEACON SSP: Secondary structure prediction
- benchmark: UTRBERT-3mer on BEACON SSP: Secondary structure prediction
- benchmark: UTRBERT-4mer on BEACON SSP: Secondary structure prediction
- benchmark: UTRBERT-5mer on BEACON SSP: Secondary structure prediction
- benchmark: UTRBERT-6mer on BEACON SSP: Secondary structure prediction