Enhancer-effect evaluation asks whether sequence-based predictions track measured changes in regulatory activity.
Explanatory profile: source reviewed · Automated source review, 2026-09-16. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
| Property | Description and evidence |
|---|---|
| Entity type | Task guide; concrete protocol identities remain separate.Sources (2)kundajelab/DART-Eval official source; DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · DART-Eval README Task 5; paper evaluation tasks and ab initio baselines |
| Datasets | No single dataset is fixed by this guide. Select a linked protocol and its versioned data release. · Not applicableSources (2)kundajelab/DART-Eval official source; DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · DART-Eval README Task 5; paper evaluation tasks and ab initio baselines |
| Organisms | No shared organism population is defined at this guide level. Record it for each selected dataset. · Not applicableSources (2)kundajelab/DART-Eval official source; DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · DART-Eval README Task 5; paper evaluation tasks and ab initio baselines |
| Assays | No single measurement assay is fixed by this guide; the endpoint and assay belong to the selected protocol. · Not applicableSources (2)kundajelab/DART-Eval official source; DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · DART-Eval README Task 5; paper evaluation tasks and ab initio baselines |
| Splits | No executable split is attached to this task identity. Use the selected protocol’s split manifest. · Not applicableSources (2)kundajelab/DART-Eval official source; DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · DART-Eval README Task 5; paper evaluation tasks and ab initio baselines |
| Allowed inputs | Regulatory DNA or matched alleles and a specified experimental activity endpoint, with genome assembly and window placement recorded.Sources (2)kundajelab/DART-Eval official source; DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · DART-Eval README Task 5; paper evaluation tasks and ab initio baselines |
| Adaptation | No common fitting regime is imposed here. Keep pretrained, frozen, probed, fine-tuned and conventional methods distinct where applicable. · Not applicableSources (2)kundajelab/DART-Eval official source; DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · DART-Eval README Task 5; paper evaluation tasks and ab initio baselines |
| Metrics | Use the metric attached to the concrete task: regulatory-element classification and quantitative effect prediction require different scoring.Sources (2)kundajelab/DART-Eval official source; DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · DART-Eval README Task 5; paper evaluation tasks and ab initio baselines |
| Baselines | DART-Eval includes supervised models trained from scratch, including ChromBPNet-related baselines, alongside language-model evaluation modes.Sources (2)kundajelab/DART-Eval official source; DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · DART-Eval README Task 5; paper evaluation tasks and ab initio baselines |
Conceptual task guide. Dataset preparation, parameters and scoring must come from a separately identified protocol.
Separate detection of regulatory DNA from prediction of the effect of a sequence change. A reporter assay and endogenous chromatin-accessibility assay are different endpoints. DART-Eval provides concrete regulatory prediction tasks and comparisons across frozen, probed and fine-tuned models. Use its exact task and data release rather than treating every enhancer test as equivalent.
This is a task guide, not a single versioned benchmark protocol. The connected resources provide examples or concrete procedures. A candidate method or proposed control is not evidence that an evaluation has been completed.
Release 2026-09-17-d277315f7d76 · 0 evaluations · 0 metric rows. Different protocols are not a single leaderboard.
No evaluations linked in this release.
Last literature check: 2026-09-17. Primary-source discovery and table/protocol screening; source checked is not independently reproduced. Raw acquisitions not automatically numerical publication approval.
| Paper or primary resource | Version | Reference |
|---|---|---|
| DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA | 2412.05430v1 | Read source |
broad task requires concrete protocol links
Reviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol.
Stable record: catalog-task-enhancer-effectsTrace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
34 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Diagram caption Conceptual task guide. Dataset preparation, parameters and scoring must come from a separately identified protocol. Individual claims | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA DART-Eval README Task 5; paper evaluation tasks and ab initio baselines Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Diagram caption Conceptual task guide. Dataset preparation, parameters and scoring must come from a separately identified protocol. Individual claims | kundajelab/DART-Eval official source DART-Eval README Task 5; paper evaluation tasks and ab initio baselines Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: af2a86d666c35304257c2fa7e15180e1fbcabb01 | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Diagram steps ["Choose assay endpoint and split","Define DNA windows and alleles","Apply declared prediction configuration","Compare scores with measured effects"] Individual claims | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA DART-Eval README Task 5; paper evaluation tasks and ab initio baselines Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Diagram steps ["Choose assay endpoint and split","Define DNA windows and alleles","Apply declared prediction configuration","Compare scores with measured effects"] Individual claims | kundajelab/DART-Eval official source DART-Eval README Task 5; paper evaluation tasks and ab initio baselines Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: af2a86d666c35304257c2fa7e15180e1fbcabb01 | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Diagram title Conceptual evaluation workflow Individual claims | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA DART-Eval README Task 5; paper evaluation tasks and ab initio baselines Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Diagram title Conceptual evaluation workflow Individual claims | kundajelab/DART-Eval official source DART-Eval README Task 5; paper evaluation tasks and ab initio baselines Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: af2a86d666c35304257c2fa7e15180e1fbcabb01 | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Entity type Task guide; concrete protocol identities remain separate. Individual claims | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA DART-Eval README Task 5; paper evaluation tasks and ab initio baselines Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Entity type Task guide; concrete protocol identities remain separate. Individual claims | kundajelab/DART-Eval official source DART-Eval README Task 5; paper evaluation tasks and ab initio baselines Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: af2a86d666c35304257c2fa7e15180e1fbcabb01 | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Datasets No single dataset is fixed by this guide. Select a linked protocol and its versioned data release. Individual claims | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA DART-Eval README Task 5; paper evaluation tasks and ab initio baselines Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings | inapplicable automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Datasets No single dataset is fixed by this guide. Select a linked protocol and its versioned data release. Individual claims | kundajelab/DART-Eval official source DART-Eval README Task 5; paper evaluation tasks and ab initio baselines Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: af2a86d666c35304257c2fa7e15180e1fbcabb01 | inapplicable automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-09-17-d277315f7d76 · Record review: discovered
Stable ID: catalog-task-enhancer-effects