Long-range regulatory evaluation asks whether useful predictions depend on information beyond a short local DNA window.
Explanatory profile: source reviewed · Automated source review, 2026-09-16. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
| Property | Description and evidence |
|---|---|
| Entity type | Task guide; concrete protocol identities remain separate.Sources (2)frederikkemarin/BEND official source; DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions |
| Datasets | No single dataset is fixed by this guide. Select a linked protocol and its versioned data release. · Not applicableSources (2)frederikkemarin/BEND official source; DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions |
| Organisms | No shared organism population is defined at this guide level. Record it for each selected dataset. · Not applicableSources (2)frederikkemarin/BEND official source; DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions |
| Assays | No single measurement assay is fixed by this guide; the endpoint and assay belong to the selected protocol. · Not applicableSources (2)frederikkemarin/BEND official source; DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions |
| Splits | No executable split is attached to this task identity. Use the selected protocol’s split manifest. · Not applicableSources (2)frederikkemarin/BEND official source; DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions |
| Allowed inputs | Genomic sequences with coordinates, a declared context window and the labels of a specific regulatory task.Sources (2)frederikkemarin/BEND official source; DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions |
| Adaptation | No common fitting regime is imposed here. Keep pretrained, frozen, probed, fine-tuned and conventional methods distinct where applicable. · Not applicableSources (2)frederikkemarin/BEND official source; DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions |
| Metrics | Use the concrete task’s metric and aggregation; there is no single score for all long-range regulation.Sources (2)frederikkemarin/BEND official source; DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions |
| Baselines | Matched short-context or task-specific methods can be proposed as controls, but require an explicit protocol and measured results before comparison.Sources (2)frederikkemarin/BEND official source; DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions |
Conceptual task guide. Dataset preparation, parameters and scoring must come from a separately identified protocol.
A large supported input window is a model capability, not by itself a test of distant regulation. Select a concrete regulatory endpoint and retain genomic coordinates, split membership and permitted context. BEND’s coordinate-based task format illustrates why those details matter. Compare configurations only when their prediction target and available information are explicit.
This is a task guide, not a single versioned benchmark protocol. The connected resources provide examples or concrete procedures. A candidate method or proposed control is not evidence that an evaluation has been completed.
Release 2026-09-17-d277315f7d76 · 0 evaluations · 0 metric rows. Different protocols are not a single leaderboard.
No evaluations linked in this release.
Last literature check: 2026-09-17. Dated primary-source discovery and protocol/table screening. Source checking does not mean experimental reproduction. Only separately extracted and independently reviewed numeric batches are publishable.
| Paper or primary resource | Version | Reference |
|---|---|---|
| DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA | NeurIPS 2024 Datasets and Benchmarks Track proceedings | Read source |
| DNALongBench: A Benchmark Suite for Long-Range DNA Prediction Tasks | PMC11741265.1 | Read source |
| BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks | Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | Read source |
primary protocol reviewed
Reviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol.
Stable record: catalog-task-long-range-regulationTrace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
34 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Diagram caption Conceptual task guide. Dataset preparation, parameters and scoring must come from a separately identified protocol. Individual claims | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Diagram caption Conceptual task guide. Dataset preparation, parameters and scoring must come from a separately identified protocol. Individual claims | frederikkemarin/BEND official source BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: ac6e80c75e09d83cf47a7b4bcf0e44599c5706cf | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Diagram steps ["Define endpoint and genomic split","Declare local and distant information","Evaluate specified configurations","Interpret scores within that endpoint"] Individual claims | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Diagram steps ["Define endpoint and genomic split","Declare local and distant information","Evaluate specified configurations","Interpret scores within that endpoint"] Individual claims | frederikkemarin/BEND official source BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: ac6e80c75e09d83cf47a7b4bcf0e44599c5706cf | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Diagram title Conceptual evaluation workflow Individual claims | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Diagram title Conceptual evaluation workflow Individual claims | frederikkemarin/BEND official source BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: ac6e80c75e09d83cf47a7b4bcf0e44599c5706cf | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Entity type Task guide; concrete protocol identities remain separate. Individual claims | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Entity type Task guide; concrete protocol identities remain separate. Individual claims | frederikkemarin/BEND official source BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: ac6e80c75e09d83cf47a7b4bcf0e44599c5706cf | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Datasets No single dataset is fixed by this guide. Select a linked protocol and its versioned data release. Individual claims | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings | inapplicable automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Datasets No single dataset is fixed by this guide. Select a linked protocol and its versioned data release. Individual claims | frederikkemarin/BEND official source BEND README: Data format and training/evaluating supervised models; DART-Eval paper: task and context distinctions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: ac6e80c75e09d83cf47a7b4bcf0e44599c5706cf | inapplicable automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-09-17-d277315f7d76 · Record review: discovered
Stable ID: catalog-task-long-range-regulation