Splice-site mapping evaluates where splice-related labels occur along a sequence. It is distinct from scoring the effect of a particular variant.
Explanatory profile: source reviewed · Automated source review, 2026-09-16. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
| Property | Description and evidence |
|---|---|
| Entity type | Task guide; concrete protocol identities remain separate.Sourcesterry-r123/RNABenchmark official source · README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants |
| Datasets | No single dataset is fixed by this guide. Select a linked protocol and its versioned data release. · Not applicableSourcesterry-r123/RNABenchmark official source · README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants |
| Organisms | No shared organism population is defined at this guide level. Record it for each selected dataset. · Not applicableSourcesterry-r123/RNABenchmark official source · README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants |
| Assays | No single measurement assay is fixed by this guide; the endpoint and assay belong to the selected protocol. · Not applicableSourcesterry-r123/RNABenchmark official source · README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants |
| Splits | No executable split is attached to this task identity. Use the selected protocol’s split manifest. · Not applicableSourcesterry-r123/RNABenchmark official source · README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants |
| Allowed inputs | Sequence windows and position-level splice labels under the selected task’s coordinate and strand conventions.Sourcesterry-r123/RNABenchmark official source · README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants |
| Adaptation | No common fitting regime is imposed here. Keep pretrained, frozen, probed, fine-tuned and conventional methods distinct where applicable. · Not applicableSourcesterry-r123/RNABenchmark official source · README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants |
| Metrics | The chosen protocol must define site-level scoring, matching tolerance and class balance; this guide does not supply one universal metric.Sourcesterry-r123/RNABenchmark official source · README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants |
| Baselines | Use the protocol’s sequence and splice-specialist comparators with matched inputs. Proposed applicability is separate from completed evaluation.Sourcesterry-r123/RNABenchmark official source · README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants |
Conceptual task guide. Dataset preparation, parameters and scoring must come from a separately identified protocol.
Choose the task’s coordinate system, sequence window and label definition before interpreting scores. BEACON lists a SpliceAI-labelled downstream task and several splice-oriented representations. Their presence in the suite identifies a task area, not a shared checkpoint or proof of performance for every listed model.
This is a task guide, not a single versioned benchmark protocol. The connected resources provide examples or concrete procedures. A candidate method or proposed control is not evidence that an evaluation has been completed.
Release 2026-09-17-d277315f7d76 · 0 evaluations · 0 metric rows. Different protocols are not a single leaderboard.
No evaluations linked in this release.
Last literature check: 2026-09-17. Dated primary-source discovery and protocol/table screening. Source checking does not mean experimental reproduction. Only separately extracted and independently reviewed numeric batches are publishable.
| Paper or primary resource | Version | Reference |
|---|---|---|
| DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes | Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | Read source |
| Benchmarking splice variant prediction algorithms using massively parallel splicing assays | Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | Read source |
primary protocol reviewed
Reviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol.
Stable record: catalog-task-rna-splice-sitesTrace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
17 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Diagram caption Conceptual task guide. Dataset preparation, parameters and scoring must come from a separately identified protocol. Individual claims | terry-r123/RNABenchmark official source README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants Version: da7f9c7ac3f39605af27e1dfcdf879adba963d79 | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Diagram steps ["Pin site labels and coordinate system","Define sequence windows and split","Predict positional splice outputs","Score sites using the declared rule"] Individual claims | terry-r123/RNABenchmark official source README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants Version: da7f9c7ac3f39605af27e1dfcdf879adba963d79 | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Diagram title Conceptual evaluation workflow Individual claims | terry-r123/RNABenchmark official source README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants Version: da7f9c7ac3f39605af27e1dfcdf879adba963d79 | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Entity type Task guide; concrete protocol identities remain separate. Individual claims | terry-r123/RNABenchmark official source README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants Version: da7f9c7ac3f39605af27e1dfcdf879adba963d79 | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Datasets No single dataset is fixed by this guide. Select a linked protocol and its versioned data release. Individual claims | terry-r123/RNABenchmark official source README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants Version: da7f9c7ac3f39605af27e1dfcdf879adba963d79 | inapplicable automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Organisms No shared organism population is defined at this guide level. Record it for each selected dataset. Individual claims | terry-r123/RNABenchmark official source README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants Version: da7f9c7ac3f39605af27e1dfcdf879adba963d79 | inapplicable automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Assays No single measurement assay is fixed by this guide; the endpoint and assay belong to the selected protocol. Individual claims | terry-r123/RNABenchmark official source README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants Version: da7f9c7ac3f39605af27e1dfcdf879adba963d79 | inapplicable automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Splits No executable split is attached to this task identity. Use the selected protocol’s split manifest. Individual claims | terry-r123/RNABenchmark official source README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants Version: da7f9c7ac3f39605af27e1dfcdf879adba963d79 | inapplicable automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Allowed inputs Sequence windows and position-level splice labels under the selected task’s coordinate and strand conventions. Individual claims | terry-r123/RNABenchmark official source README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants Version: da7f9c7ac3f39605af27e1dfcdf879adba963d79 | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Adaptation No common fitting regime is imposed here. Keep pretrained, frozen, probed, fine-tuned and conventional methods distinct where applicable. Individual claims | terry-r123/RNABenchmark official source README: Tasks and Datasets (SpliceAI task); model inventory including SpliceBERT variants Version: da7f9c7ac3f39605af27e1dfcdf879adba963d79 | inapplicable automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-09-17-d277315f7d76 · Record review: discovered
Stable ID: catalog-task-rna-splice-sites