Translation and RNA-stability tasks test different measurable properties of transcripts and should be reported as separate endpoints.
Explanatory profile: source reviewed · Automated source review, 2026-09-16. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
| Property | Description and evidence |
|---|---|
| Entity type | Task guide; concrete protocol identities remain separate.Sourcesmorrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models |
| Datasets | No single dataset is fixed by this guide. Select a linked protocol and its versioned data release. · Not applicableSourcesmorrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models |
| Organisms | No shared organism population is defined at this guide level. Record it for each selected dataset. · Not applicableSourcesmorrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models |
| Assays | No single measurement assay is fixed by this guide; the endpoint and assay belong to the selected protocol. · Not applicableSourcesmorrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models |
| Splits | No executable split is attached to this task identity. Use the selected protocol’s split manifest. · Not applicableSourcesmorrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models |
| Allowed inputs | Transcript or UTR sequences with task-specific experimental measurements and declared transcript-region boundaries.Sourcesmorrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models |
| Adaptation | No common fitting regime is imposed here. Keep pretrained, frozen, probed, fine-tuned and conventional methods distinct where applicable. · Not applicableSourcesmorrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models |
| Metrics | Endpoint-specific regression or classification as defined by the selected dataset; retain measurement units and any target transformation.Sourcesmorrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models |
| Baselines | mRNABench supplies conventional baselines alongside RNA and DNA representation models. Compare only within the same endpoint, split and input scope.Sourcesmorrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models |
Conceptual task guide. Dataset preparation, parameters and scoring must come from a separately identified protocol.
Select the endpoint and biological context before comparing methods. mRNABench distinguishes mean ribosome load, translation efficiency and RNA half-life datasets. Reporter constructs, native transcripts and different organisms are not interchangeable datasets. Record which transcript regions and supervision are available to the model.
This is a task guide, not a single versioned benchmark protocol. The connected resources provide examples or concrete procedures. A candidate method or proposed control is not evidence that an evaluation has been completed.
Release 2026-09-17-d277315f7d76 · 0 evaluations · 0 metric rows. Different protocols are not a single leaderboard.
No evaluations linked in this release.
Last literature check: 2026-09-17. Primary-source discovery and table/protocol screening; source checked is not independently reproduced. Raw acquisitions not automatically numerical publication approval.
| Paper or primary resource | Version | Reference |
|---|---|---|
| mRNABench: A curated benchmark for mature mRNA property and function prediction | PMC primary-source artifact, version pinned by SHA256 | Read source DOI: 10.1101/2025.07.05.662870 |
broad task requires concrete protocol links
Reviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol.
Stable record: catalog-task-utr-translationTrace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
17 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Diagram caption Conceptual task guide. Dataset preparation, parameters and scoring must come from a separately identified protocol. Individual claims | morrislab/mRNABench official source README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Diagram steps ["Choose molecular endpoint and dataset","Fix sequence regions and held-out split","Fit or apply the declared predictor","Score the matching measurement"] Individual claims | morrislab/mRNABench official source README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Diagram title Conceptual evaluation workflow Individual claims | morrislab/mRNABench official source README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Entity type Task guide; concrete protocol identities remain separate. Individual claims | morrislab/mRNABench official source README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Datasets No single dataset is fixed by this guide. Select a linked protocol and its versioned data release. Individual claims | morrislab/mRNABench official source README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 | inapplicable automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Organisms No shared organism population is defined at this guide level. Record it for each selected dataset. Individual claims | morrislab/mRNABench official source README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 | inapplicable automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Assays No single measurement assay is fixed by this guide; the endpoint and assay belong to the selected protocol. Individual claims | morrislab/mRNABench official source README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 | inapplicable automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Splits No executable split is attached to this task identity. Use the selected protocol’s split manifest. Individual claims | morrislab/mRNABench official source README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 | inapplicable automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Allowed inputs Transcript or UTR sequences with task-specific experimental measurements and declared transcript-region boundaries. Individual claims | morrislab/mRNABench official source README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Adaptation No common fitting regime is imposed here. Keep pretrained, frozen, probed, fine-tuned and conventional methods distinct where applicable. Individual claims | morrislab/mRNABench official source README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 | inapplicable automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-09-17-d277315f7d76 · Record review: discovered
Stable ID: catalog-task-utr-translation