mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
Mean ribosome load on an MPRA library. Scored with R on mRNABench MRL MPRA. A linear probe over frozen embeddings, scored as the mean over ten random seeds.
Overview
Mean ribosome load on an MPRA library. Scored with R on mRNABench MRL MPRA. A linear probe over frozen embeddings, scored as the mean over ten random seeds.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- 3UTRBERT on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- AIDO.RNA on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- DNABERT-S on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- DNABERT2 on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- ERNIE-RNA on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- Evo1 on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- Evo2 on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- Helix-mRNA on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- HyenaDNA on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- Naive Baseline on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- Naive Mamba on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- NT on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Published comparisons
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.
mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
pearson_r (correlation) · Higher values are better for this metric.
Every method mRNABench reports on Mean ribosome load on an MPRA library, scored with R on mRNABench MRL MPRA.
- Naive Baseline · Method · Author-reported evaluation0.64
- Naive Mamba · Method · Author-reported evaluation0.50
- Supervised CNN · Method · Author-reported evaluation0.77
- 3UTRBERT · Configuration · Author-reported evaluation0.60
- AIDO.RNA · Configuration · Author-reported evaluation0.65
- DNABERT-S · Configuration · Author-reported evaluation0.52
- DNABERT2 · Configuration · Author-reported evaluation0.57
- ERNIE-RNA · Configuration · Author-reported evaluation0.58
- Evo1 · Configuration · Author-reported evaluation0.28
- Evo2 · Configuration · Author-reported evaluation0.70
- Helix-mRNA · Configuration · Author-reported evaluation0.44
- HyenaDNA · Configuration · Author-reported evaluation0.49
- NT · Configuration · Author-reported evaluation0.60
- Orthrus · Configuration · Author-reported evaluation0.63
- RNA-FM · Configuration · Author-reported evaluation0.49
- RNA-MSM · Configuration · Author-reported evaluation0.36
- RNABERT · Configuration · Author-reported evaluation0.24
- RNAErnie · Configuration · Author-reported evaluation0.33
- RiNALMo · Configuration · Author-reported evaluation0.74
- SpliceBERT · Configuration · Author-reported evaluation0.53
- UTR-LM · Configuration · Author-reported evaluation0.54
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, column(MRL MPRA)Values, uncertainty and evidence
| Tested entity | Printed value | Uncertainty | Evidence |
|---|---|---|---|
| Naive Baseline · Method | 0.64 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Naive Baseline), column(MRL MPRA) |
| Naive Mamba · Method | 0.50 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Naive Mamba), column(MRL MPRA) |
| Supervised CNN · Method | 0.77 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Supervised CNN), column(MRL MPRA) |
| 3UTRBERT · Configuration | 0.60 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(3UTRBERT), column(MRL MPRA) |
| AIDO.RNA · Configuration | 0.65 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(AIDO.RNA), column(MRL MPRA) |
| DNABERT-S · Configuration | 0.52 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(DNABERT-S), column(MRL MPRA) |
| DNABERT2 · Configuration | 0.57 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(DNABERT2), column(MRL MPRA) |
| ERNIE-RNA · Configuration | 0.58 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(ERNIE-RNA), column(MRL MPRA) |
| Evo1 · Configuration | 0.28 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Evo1), column(MRL MPRA) |
| Evo2 · Configuration | 0.70 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Evo2), column(MRL MPRA) |
| Helix-mRNA · Configuration | 0.44 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Helix-mRNA), column(MRL MPRA) |
| HyenaDNA · Configuration | 0.49 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(HyenaDNA), column(MRL MPRA) |
| NT · Configuration | 0.60 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(NT), column(MRL MPRA) |
| Orthrus · Configuration | 0.63 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Orthrus), column(MRL MPRA) |
| RNA-FM · Configuration | 0.49 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNA-FM), column(MRL MPRA) |
| RNA-MSM · Configuration | 0.36 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNA-MSM), column(MRL MPRA) |
| RNABERT · Configuration | 0.24 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNABERT), column(MRL MPRA) |
| RNAErnie · Configuration | 0.33 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNAErnie), column(MRL MPRA) |
| RiNALMo · Configuration | 0.74 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RiNALMo), column(MRL MPRA) |
| SpliceBERT · Configuration | 0.53 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(SpliceBERT), column(MRL MPRA) |
| UTR-LM · Configuration | 0.54 correlation | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(UTR-LM), column(MRL MPRA) |
Scope and limitations
- Author-reported numbers, source checked but not independently reproduced.
- Metrics alternate between AUPRC on a percentage scale and Pearson R, so figures in different columns are on different scales.
- Each row is the best checkpoint of a model family, chosen by the authors, not the family's average.
Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-17-134cd1815de8 · 21 evaluations · 21 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| 3UTRBERT on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Configuration: 3UTRBERTTask: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.60 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(3UTRBERT), column(MRL MPRA) Source checking is not independent reproduction. |
| AIDO.RNA on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Configuration: AIDO.RNATask: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.65 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(AIDO.RNA), column(MRL MPRA) Source checking is not independent reproduction. |
| DNABERT-S on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Configuration: DNABERT-STask: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.52 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(DNABERT-S), column(MRL MPRA) Source checking is not independent reproduction. |
| DNABERT2 on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Configuration: DNABERT2Task: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.57 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(DNABERT2), column(MRL MPRA) Source checking is not independent reproduction. |
| ERNIE-RNA on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Configuration: ERNIE-RNATask: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.58 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(ERNIE-RNA), column(MRL MPRA) Source checking is not independent reproduction. |
| Evo1 on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Configuration: Evo1Task: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.28 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Evo1), column(MRL MPRA) Source checking is not independent reproduction. |
| Evo2 on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Configuration: Evo2Task: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.70 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Evo2), column(MRL MPRA) Source checking is not independent reproduction. |
| Helix-mRNA on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Configuration: Helix-mRNATask: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.44 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Helix-mRNA), column(MRL MPRA) Source checking is not independent reproduction. |
| HyenaDNA on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Configuration: HyenaDNATask: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.49 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(HyenaDNA), column(MRL MPRA) Source checking is not independent reproduction. |
| Naive Baseline on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Method: Naive BaselineTask: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.64 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Naive Baseline), column(MRL MPRA) Source checking is not independent reproduction. |
| Naive Mamba on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Method: Naive MambaTask: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.50 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Naive Mamba), column(MRL MPRA) Source checking is not independent reproduction. |
| NT on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Configuration: NTTask: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.60 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(NT), column(MRL MPRA) Source checking is not independent reproduction. |
| Orthrus on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Configuration: OrthrusTask: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.63 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Orthrus), column(MRL MPRA) Source checking is not independent reproduction. |
| RiNALMo on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Configuration: RiNALMoTask: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.74 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RiNALMo), column(MRL MPRA) Source checking is not independent reproduction. |
| RNA-FM on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Configuration: RNA-FMTask: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.49 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNA-FM), column(MRL MPRA) Source checking is not independent reproduction. |
| RNA-MSM on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Configuration: RNA-MSMTask: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.36 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNA-MSM), column(MRL MPRA) Source checking is not independent reproduction. |
| RNABERT on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Configuration: RNABERTTask: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.24 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNABERT), column(MRL MPRA) Source checking is not independent reproduction. |
| RNAErnie on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Configuration: RNAErnieTask: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.33 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNAErnie), column(MRL MPRA) Source checking is not independent reproduction. |
| SpliceBERT on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Configuration: SpliceBERTTask: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.53 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(SpliceBERT), column(MRL MPRA) Source checking is not independent reproduction. |
| Supervised CNN on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Method: Supervised CNNTask: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.77 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Supervised CNN), column(MRL MPRA) Source checking is not independent reproduction. |
| UTR-LM on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library Configuration: UTR-LMTask: mRNABench MRL-MPRA: Mean ribosome load on an MPRA libraryDataset subset: mRNABench MRL MPRA (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.54 pearson_r Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(UTR-LM), column(MRL MPRA) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-mrnabench Individual claims | mRNABench: A curated benchmark for mature mRNA property and function prediction Table 2, column(MRL MPRA) Version: preprint archived 2025-07-08 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: mrnabench-association-mrl-mpra Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- mRNABench: A curated benchmark for mature mRNA property and function prediction · Original source · preprint archived 2025-07-08
Technical metadata and extraction receipts
Stable ID: mrnabench-task-mrl-mpra
- areas
- rna-transcriptomes
- tasks
- Mean ribosome load on an MPRA library
- metric
- R
- metric direction
- higher
- dataset
- mRNABench MRL MPRA
- protocol
- A linear probe over frozen embeddings, scored as the mean over ten random seeds.
- source locator
- Table 2, column(MRL MPRA)
- comparison panels
- id: mrnabench-panel-mrl-mpra; title: mRNABench MRL-MPRA: Mean ribosome load on an MPRA library; protocol id: mrnabench-task-mrl-mpra; dataset id: mrnabench-dataset-mrnabench-mrl-mpra; metric: pearson_r; unit: correlation; direction: higher; result ids: mrnabench-result-naive-baseline-mrl-mpra-pearson-r; mrnabench-result-naive-mamba-mrl-mpra-pearson-r; mrnabench-result-supervised-cnn-mrl-mpra-pearson-r; mrnabench-result-3utrbert-mrl-mpra-pearson-r; mrnabench-result-aido-rna-mrl-mpra-pearson-r; mrnabench-result-dnabert-s-mrl-mpra-pearson-r; mrnabench-result-dnabert2-mrl-mpra-pearson-r; mrnabench-result-ernie-rna-mrl-mpra-pearson-r; mrnabench-result-evo1-mrl-mpra-pearson-r; mrnabench-result-evo2-mrl-mpra-pearson-r; mrnabench-result-helix-mrna-mrl-mpra-pearson-r; mrnabench-result-hyenadna-mrl-mpra-pearson-r; mrnabench-result-nt-mrl-mpra-pearson-r; mrnabench-result-orthrus-mrl-mpra-pearson-r; mrnabench-result-rna-fm-mrl-mpra-pearson-r; mrnabench-result-rna-msm-mrl-mpra-pearson-r; mrnabench-result-rnabert-mrl-mpra-pearson-r; mrnabench-result-rnaernie-mrl-mpra-pearson-r; mrnabench-result-rinalmo-mrl-mpra-pearson-r; mrnabench-result-splicebert-mrl-mpra-pearson-r; mrnabench-result-utr-lm-mrl-mpra-pearson-r; source ids: expansion-p3-mrnabench-2025; source locator: Table 2, column(MRL MPRA); context: Every method mRNABench reports on Mean ribosome load on an MPRA library, scored with R on mRNABench MRL MPRA.; caveats: Author-reported numbers, source checked but not independently reproduced.; Metrics alternate between AUPRC on a percentage scale and Pearson R, so figures in different columns are on different scales.; Each row is the best checkpoint of a model family, chosen by the authors, not the family's average.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: mRNABench
- subject: mRNABench MRL-MPRA: part of discovery-benchmark-mrnabench
- benchmark: 3UTRBERT on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: AIDO.RNA on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: DNABERT-S on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: DNABERT2 on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: ERNIE-RNA on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: Evo1 on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: Evo2 on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: Helix-mRNA on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: HyenaDNA on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: Naive Baseline on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: Naive Mamba on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: NT on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: Orthrus on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: RiNALMo on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: RNA-FM on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: RNA-MSM on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: RNABERT on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: RNAErnie on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: SpliceBERT on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: Supervised CNN on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
- benchmark: UTR-LM on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library