mRNABench MRNA-LOC-SR: mRNA localisation, short range
mRNA localisation, short range. Scored with AUPRC (%) on mRNABench mRNA Loc-SR. A linear probe over frozen embeddings, scored as the mean over ten random seeds.
Overview
mRNA localisation, short range. Scored with AUPRC (%) on mRNABench mRNA Loc-SR. A linear probe over frozen embeddings, scored as the mean over ten random seeds.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- 3UTRBERT on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- AIDO.RNA on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- DNABERT-S on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- DNABERT2 on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- ERNIE-RNA on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- Evo1 on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- Evo2 on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- Helix-mRNA on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- HyenaDNA on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- Naive Baseline on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- Naive Mamba on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- NT on mRNABench MRNA-LOC-SR: mRNA localisation, short range
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Published comparisons
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.
mRNABench MRNA-LOC-SR: mRNA localisation, short range
auprc (percent) · Higher values are better for this metric.
Every method mRNABench reports on mRNA localisation, short range, scored with AUPRC (%) on mRNABench mRNA Loc-SR.
Evaluation protocol · mRNABench mRNA Loc-SR (mRNABench split)
- Naive Baseline · Method · Author-reported evaluation60.1
- Naive Mamba · Method · Author-reported evaluation63.1
- Supervised CNN · Method · Author-reported evaluation64.5
- 3UTRBERT · Configuration · Author-reported evaluation63.3
- AIDO.RNA · Configuration · Author-reported evaluation73.8
- DNABERT-S · Configuration · Author-reported evaluation68.4
- DNABERT2 · Configuration · Author-reported evaluation67.4
- ERNIE-RNA · Configuration · Author-reported evaluation69.1
- Evo1 · Configuration · Author-reported evaluation63.3
- Evo2 · Configuration · Author-reported evaluation76.7
- Helix-mRNA · Configuration · Author-reported evaluation61.2
- HyenaDNA · Configuration · Author-reported evaluation67.2
- NT · Configuration · Author-reported evaluation72.2
- Orthrus · Configuration · Author-reported evaluation77.9
- RNA-FM · Configuration · Author-reported evaluation67.0
- RNA-MSM · Configuration · Author-reported evaluation63.7
- RNABERT · Configuration · Author-reported evaluation57.5
- RNAErnie · Configuration · Author-reported evaluation63.7
- RiNALMo · Configuration · Author-reported evaluation69.0
- SpliceBERT · Configuration · Author-reported evaluation72.6
- UTR-LM · Configuration · Author-reported evaluation65.8
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, column(mRNA Loc-SR)Values, uncertainty and evidence
| Tested entity | Printed value | Uncertainty | Evidence |
|---|---|---|---|
| Naive Baseline · Method | 60.1 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Naive Baseline), column(mRNA Loc-SR) |
| Naive Mamba · Method | 63.1 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Naive Mamba), column(mRNA Loc-SR) |
| Supervised CNN · Method | 64.5 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Supervised CNN), column(mRNA Loc-SR) |
| 3UTRBERT · Configuration | 63.3 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(3UTRBERT), column(mRNA Loc-SR) |
| AIDO.RNA · Configuration | 73.8 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(AIDO.RNA), column(mRNA Loc-SR) |
| DNABERT-S · Configuration | 68.4 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(DNABERT-S), column(mRNA Loc-SR) |
| DNABERT2 · Configuration | 67.4 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(DNABERT2), column(mRNA Loc-SR) |
| ERNIE-RNA · Configuration | 69.1 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(ERNIE-RNA), column(mRNA Loc-SR) |
| Evo1 · Configuration | 63.3 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Evo1), column(mRNA Loc-SR) |
| Evo2 · Configuration | 76.7 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Evo2), column(mRNA Loc-SR) |
| Helix-mRNA · Configuration | 61.2 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Helix-mRNA), column(mRNA Loc-SR) |
| HyenaDNA · Configuration | 67.2 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(HyenaDNA), column(mRNA Loc-SR) |
| NT · Configuration | 72.2 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(NT), column(mRNA Loc-SR) |
| Orthrus · Configuration | 77.9 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Orthrus), column(mRNA Loc-SR) |
| RNA-FM · Configuration | 67.0 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNA-FM), column(mRNA Loc-SR) |
| RNA-MSM · Configuration | 63.7 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNA-MSM), column(mRNA Loc-SR) |
| RNABERT · Configuration | 57.5 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNABERT), column(mRNA Loc-SR) |
| RNAErnie · Configuration | 63.7 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNAErnie), column(mRNA Loc-SR) |
| RiNALMo · Configuration | 69.0 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RiNALMo), column(mRNA Loc-SR) |
| SpliceBERT · Configuration | 72.6 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(SpliceBERT), column(mRNA Loc-SR) |
| UTR-LM · Configuration | 65.8 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(UTR-LM), column(mRNA Loc-SR) |
Scope and limitations
- Author-reported numbers, source checked but not independently reproduced.
- Metrics alternate between AUPRC on a percentage scale and Pearson R, so figures in different columns are on different scales.
- Each row is the best checkpoint of a model family, chosen by the authors, not the family's average.
Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-17-134cd1815de8 · 21 evaluations · 21 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| 3UTRBERT on mRNABench MRNA-LOC-SR: mRNA localisation, short range Configuration: 3UTRBERTTask: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 63.3% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(3UTRBERT), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| AIDO.RNA on mRNABench MRNA-LOC-SR: mRNA localisation, short range Configuration: AIDO.RNATask: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 73.8% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(AIDO.RNA), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| DNABERT-S on mRNABench MRNA-LOC-SR: mRNA localisation, short range Configuration: DNABERT-STask: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 68.4% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(DNABERT-S), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| DNABERT2 on mRNABench MRNA-LOC-SR: mRNA localisation, short range Configuration: DNABERT2Task: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 67.4% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(DNABERT2), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| ERNIE-RNA on mRNABench MRNA-LOC-SR: mRNA localisation, short range Configuration: ERNIE-RNATask: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 69.1% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(ERNIE-RNA), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| Evo1 on mRNABench MRNA-LOC-SR: mRNA localisation, short range Configuration: Evo1Task: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 63.3% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Evo1), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| Evo2 on mRNABench MRNA-LOC-SR: mRNA localisation, short range Configuration: Evo2Task: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 76.7% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Evo2), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| Helix-mRNA on mRNABench MRNA-LOC-SR: mRNA localisation, short range Configuration: Helix-mRNATask: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 61.2% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Helix-mRNA), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| HyenaDNA on mRNABench MRNA-LOC-SR: mRNA localisation, short range Configuration: HyenaDNATask: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 67.2% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(HyenaDNA), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| Naive Baseline on mRNABench MRNA-LOC-SR: mRNA localisation, short range Method: Naive BaselineTask: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 60.1% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Naive Baseline), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| Naive Mamba on mRNABench MRNA-LOC-SR: mRNA localisation, short range Method: Naive MambaTask: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 63.1% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Naive Mamba), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| NT on mRNABench MRNA-LOC-SR: mRNA localisation, short range Configuration: NTTask: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 72.2% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(NT), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| Orthrus on mRNABench MRNA-LOC-SR: mRNA localisation, short range Configuration: OrthrusTask: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 77.9% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Orthrus), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| RiNALMo on mRNABench MRNA-LOC-SR: mRNA localisation, short range Configuration: RiNALMoTask: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 69.0% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RiNALMo), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| RNA-FM on mRNABench MRNA-LOC-SR: mRNA localisation, short range Configuration: RNA-FMTask: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 67.0% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNA-FM), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| RNA-MSM on mRNABench MRNA-LOC-SR: mRNA localisation, short range Configuration: RNA-MSMTask: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 63.7% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNA-MSM), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| RNABERT on mRNABench MRNA-LOC-SR: mRNA localisation, short range Configuration: RNABERTTask: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 57.5% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNABERT), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| RNAErnie on mRNABench MRNA-LOC-SR: mRNA localisation, short range Configuration: RNAErnieTask: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 63.7% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNAErnie), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| SpliceBERT on mRNABench MRNA-LOC-SR: mRNA localisation, short range Configuration: SpliceBERTTask: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 72.6% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(SpliceBERT), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| Supervised CNN on mRNABench MRNA-LOC-SR: mRNA localisation, short range Method: Supervised CNNTask: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 64.5% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Supervised CNN), column(mRNA Loc-SR) Source checking is not independent reproduction. |
| UTR-LM on mRNABench MRNA-LOC-SR: mRNA localisation, short range Configuration: UTR-LMTask: mRNABench MRNA-LOC-SR: mRNA localisation, short rangeDataset subset: mRNABench mRNA Loc-SR (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 65.8% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(UTR-LM), column(mRNA Loc-SR) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-mrnabench Individual claims | mRNABench: A curated benchmark for mature mRNA property and function prediction Table 2, column(mRNA Loc-SR) Version: preprint archived 2025-07-08 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: mrnabench-association-mrna-loc-sr Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- mRNABench: A curated benchmark for mature mRNA property and function prediction · Original source · preprint archived 2025-07-08
Technical metadata and extraction receipts
Stable ID: mrnabench-task-mrna-loc-sr
- areas
- rna-transcriptomes
- tasks
- mRNA localisation, short range
- metric
- AUPRC (%)
- metric direction
- higher
- dataset
- mRNABench mRNA Loc-SR
- protocol
- A linear probe over frozen embeddings, scored as the mean over ten random seeds.
- source locator
- Table 2, column(mRNA Loc-SR)
- comparison panels
- id: mrnabench-panel-mrna-loc-sr; title: mRNABench MRNA-LOC-SR: mRNA localisation, short range; protocol id: mrnabench-task-mrna-loc-sr; dataset id: mrnabench-dataset-mrnabench-mrna-loc-sr; metric: auprc; unit: percent; direction: higher; result ids: mrnabench-result-naive-baseline-mrna-loc-sr-auprc; mrnabench-result-naive-mamba-mrna-loc-sr-auprc; mrnabench-result-supervised-cnn-mrna-loc-sr-auprc; mrnabench-result-3utrbert-mrna-loc-sr-auprc; mrnabench-result-aido-rna-mrna-loc-sr-auprc; mrnabench-result-dnabert-s-mrna-loc-sr-auprc; mrnabench-result-dnabert2-mrna-loc-sr-auprc; mrnabench-result-ernie-rna-mrna-loc-sr-auprc; mrnabench-result-evo1-mrna-loc-sr-auprc; mrnabench-result-evo2-mrna-loc-sr-auprc; mrnabench-result-helix-mrna-mrna-loc-sr-auprc; mrnabench-result-hyenadna-mrna-loc-sr-auprc; mrnabench-result-nt-mrna-loc-sr-auprc; mrnabench-result-orthrus-mrna-loc-sr-auprc; mrnabench-result-rna-fm-mrna-loc-sr-auprc; mrnabench-result-rna-msm-mrna-loc-sr-auprc; mrnabench-result-rnabert-mrna-loc-sr-auprc; mrnabench-result-rnaernie-mrna-loc-sr-auprc; mrnabench-result-rinalmo-mrna-loc-sr-auprc; mrnabench-result-splicebert-mrna-loc-sr-auprc; mrnabench-result-utr-lm-mrna-loc-sr-auprc; source ids: expansion-p3-mrnabench-2025; source locator: Table 2, column(mRNA Loc-SR); context: Every method mRNABench reports on mRNA localisation, short range, scored with AUPRC (%) on mRNABench mRNA Loc-SR.; caveats: Author-reported numbers, source checked but not independently reproduced.; Metrics alternate between AUPRC on a percentage scale and Pearson R, so figures in different columns are on different scales.; Each row is the best checkpoint of a model family, chosen by the authors, not the family's average.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: mRNABench
- subject: mRNABench MRNA-LOC-SR: part of discovery-benchmark-mrnabench
- benchmark: 3UTRBERT on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: AIDO.RNA on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: DNABERT-S on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: DNABERT2 on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: ERNIE-RNA on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: Evo1 on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: Evo2 on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: Helix-mRNA on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: HyenaDNA on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: Naive Baseline on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: Naive Mamba on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: NT on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: Orthrus on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: RiNALMo on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: RNA-FM on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: RNA-MSM on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: RNABERT on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: RNAErnie on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: SpliceBERT on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: Supervised CNN on mRNABench MRNA-LOC-SR: mRNA localisation, short range
- benchmark: UTR-LM on mRNABench MRNA-LOC-SR: mRNA localisation, short range