Task

mRNABench VEP: Variant effect prediction

Variant effect prediction. Scored with AUPRC (%) on mRNABench VEP. A linear probe over frozen embeddings, scored as the mean over ten random seeds.

21 evaluations · 21 metric rows

Overview

Variant effect prediction. Scored with AUPRC (%) on mRNABench VEP. A linear probe over frozen embeddings, scored as the mean over ten random seeds.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluation design

Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.

Benchmarks

mRNABench

These source-backed links do not make different protocols or scores interchangeable.

Recorded evaluations

Each evaluation records what was tested and under which conditions.

Explore all linked results

Run instructions

No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.

A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.

Published comparisons

Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.

Comparison and metric

mRNABench VEP: Variant effect prediction

auprc (percent) · Higher values are better for this metric.

Every method mRNABench reports on Variant effect prediction, scored with AUPRC (%) on mRNABench VEP.

Evaluation protocol · mRNABench VEP (mRNABench split)

Naive Baseline · Method · Author-reported evaluation19.5
Naive Mamba · Method · Author-reported evaluation10.2
Supervised CNN · Method · Author-reported evaluation33.2
3UTRBERT · Configuration · Author-reported evaluation31.2
AIDO.RNA · Configuration · Author-reported evaluation30.4
DNABERT-S · Configuration · Author-reported evaluation30.6
DNABERT2 · Configuration · Author-reported evaluation26.4
ERNIE-RNA · Configuration · Author-reported evaluation28.9
Evo1 · Configuration · Author-reported evaluation12.0
Evo2 · Configuration · Author-reported evaluation32.1
Helix-mRNA · Configuration · Author-reported evaluation7.6
HyenaDNA · Configuration · Author-reported evaluation23.2
NT · Configuration · Author-reported evaluation31.8
Orthrus · Configuration · Author-reported evaluation27.0
RNA-FM · Configuration · Author-reported evaluation25.7
RNA-MSM · Configuration · Author-reported evaluation16.5
RNABERT · Configuration · Author-reported evaluation19.2
RNAErnie · Configuration · Author-reported evaluation17.3
RiNALMo · Configuration · Author-reported evaluation31.6
SpliceBERT · Configuration · Author-reported evaluation28.2
UTR-LM · Configuration · Author-reported evaluation21.3

Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.

mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, column(VEP)

Values, uncertainty and evidence

auprc: original source values
Tested entity	Printed value	Uncertainty	Evidence
Naive Baseline · Method	19.5 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Naive Baseline), column(VEP)
Naive Mamba · Method	10.2 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Naive Mamba), column(VEP)
Supervised CNN · Method	33.2 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Supervised CNN), column(VEP)
3UTRBERT · Configuration	31.2 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(3UTRBERT), column(VEP)
AIDO.RNA · Configuration	30.4 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(AIDO.RNA), column(VEP)
DNABERT-S · Configuration	30.6 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(DNABERT-S), column(VEP)
DNABERT2 · Configuration	26.4 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(DNABERT2), column(VEP)
ERNIE-RNA · Configuration	28.9 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(ERNIE-RNA), column(VEP)
Evo1 · Configuration	12.0 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Evo1), column(VEP)
Evo2 · Configuration	32.1 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Evo2), column(VEP)
Helix-mRNA · Configuration	7.6 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Helix-mRNA), column(VEP)
HyenaDNA · Configuration	23.2 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(HyenaDNA), column(VEP)
NT · Configuration	31.8 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(NT), column(VEP)
Orthrus · Configuration	27.0 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Orthrus), column(VEP)
RNA-FM · Configuration	25.7 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNA-FM), column(VEP)
RNA-MSM · Configuration	16.5 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNA-MSM), column(VEP)
RNABERT · Configuration	19.2 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNABERT), column(VEP)
RNAErnie · Configuration	17.3 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNAErnie), column(VEP)
RiNALMo · Configuration	31.6 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RiNALMo), column(VEP)
SpliceBERT · Configuration	28.2 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(SpliceBERT), column(VEP)
UTR-LM · Configuration	21.3 percent	Not reported	Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(UTR-LM), column(VEP)

Scope and limitations

Author-reported numbers, source checked but not independently reproduced.
Metrics alternate between AUPRC on a percentage scale and Pearson R, so figures in different columns are on different scales.
Each row is the best checkpoint of a model family, chosen by the authors, not the family's average.

Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.

Tested entities and results

Release 2026-09-17-134cd1815de8 · 21 evaluations · 21 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.

Evaluation setupMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
3UTRBERT on mRNABench VEP: Variant effect prediction Configuration: 3UTRBERTTask: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
31.2% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(3UTRBERT), column(VEP) Source checking is not independent reproduction.
AIDO.RNA on mRNABench VEP: Variant effect prediction Configuration: AIDO.RNATask: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
30.4% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(AIDO.RNA), column(VEP) Source checking is not independent reproduction.
DNABERT-S on mRNABench VEP: Variant effect prediction Configuration: DNABERT-STask: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
30.6% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(DNABERT-S), column(VEP) Source checking is not independent reproduction.
DNABERT2 on mRNABench VEP: Variant effect prediction Configuration: DNABERT2Task: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
26.4% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(DNABERT2), column(VEP) Source checking is not independent reproduction.
ERNIE-RNA on mRNABench VEP: Variant effect prediction Configuration: ERNIE-RNATask: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
28.9% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(ERNIE-RNA), column(VEP) Source checking is not independent reproduction.
Evo1 on mRNABench VEP: Variant effect prediction Configuration: Evo1Task: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
12.0% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Evo1), column(VEP) Source checking is not independent reproduction.
Evo2 on mRNABench VEP: Variant effect prediction Configuration: Evo2Task: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
32.1% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Evo2), column(VEP) Source checking is not independent reproduction.
Helix-mRNA on mRNABench VEP: Variant effect prediction Configuration: Helix-mRNATask: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
7.6% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Helix-mRNA), column(VEP) Source checking is not independent reproduction.
HyenaDNA on mRNABench VEP: Variant effect prediction Configuration: HyenaDNATask: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
23.2% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(HyenaDNA), column(VEP) Source checking is not independent reproduction.
Naive Baseline on mRNABench VEP: Variant effect prediction Method: Naive BaselineTask: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
19.5% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Naive Baseline), column(VEP) Source checking is not independent reproduction.
Naive Mamba on mRNABench VEP: Variant effect prediction Method: Naive MambaTask: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
10.2% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Naive Mamba), column(VEP) Source checking is not independent reproduction.
NT on mRNABench VEP: Variant effect prediction Configuration: NTTask: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
31.8% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(NT), column(VEP) Source checking is not independent reproduction.
Orthrus on mRNABench VEP: Variant effect prediction Configuration: OrthrusTask: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
27.0% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Orthrus), column(VEP) Source checking is not independent reproduction.
RiNALMo on mRNABench VEP: Variant effect prediction Configuration: RiNALMoTask: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
31.6% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RiNALMo), column(VEP) Source checking is not independent reproduction.
RNA-FM on mRNABench VEP: Variant effect prediction Configuration: RNA-FMTask: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
25.7% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNA-FM), column(VEP) Source checking is not independent reproduction.
RNA-MSM on mRNABench VEP: Variant effect prediction Configuration: RNA-MSMTask: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
16.5% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNA-MSM), column(VEP) Source checking is not independent reproduction.
RNABERT on mRNABench VEP: Variant effect prediction Configuration: RNABERTTask: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
19.2% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNABERT), column(VEP) Source checking is not independent reproduction.
RNAErnie on mRNABench VEP: Variant effect prediction Configuration: RNAErnieTask: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
17.3% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNAErnie), column(VEP) Source checking is not independent reproduction.
SpliceBERT on mRNABench VEP: Variant effect prediction Configuration: SpliceBERTTask: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
28.2% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(SpliceBERT), column(VEP) Source checking is not independent reproduction.
Supervised CNN on mRNABench VEP: Variant effect prediction Method: Supervised CNNTask: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
33.2% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Supervised CNN), column(VEP) Source checking is not independent reproduction.
UTR-LM on mRNABench VEP: Variant effect prediction Configuration: UTR-LMTask: mRNABench VEP: Variant effect predictionDataset subset: mRNABench VEP (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked
21.3% auprc Unit: percent · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(UTR-LM), column(VEP) Source checking is not independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-134cd1815de8
Property and statement	Original source and location	Review and provenance
Relationship: part of discovery-benchmark-mrnabench Individual claims	mRNABench: A curated benchmark for mature mRNA property and function prediction Original source ↗ Table 2, column(VEP) Version: preprint archived 2025-07-08 Retrieved: 2026-09-16T10:41:16.497221+00:00	source checked automated source review · 2026-09-18 Audit details Primary-source transcription with no human sign-off and no independent reproduction. Field: `links:part_of:discovery-benchmark-mrnabench` Claim: mrnabench-association-vep Source artifact SHA-256: `79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact

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Sources and history

Release 2026-09-17-134cd1815de8 · Record review: source checked

1 source records and release history

mRNABench: A curated benchmark for mature mRNA property and function prediction · Original source · preprint archived 2025-07-08

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Technical metadata and extraction receipts

Stable ID: mrnabench-task-vep

areas: rna-transcriptomes
tasks: Variant effect prediction
metric: AUPRC (%)
metric direction: higher
dataset: mRNABench VEP
protocol: A linear probe over frozen embeddings, scored as the mean over ten random seeds.
source locator: Table 2, column(VEP)
comparison panels: id: mrnabench-panel-vep; title: mRNABench VEP: Variant effect prediction; protocol id: mrnabench-task-vep; dataset id: mrnabench-dataset-mrnabench-vep; metric: auprc; unit: percent; direction: higher; result ids: mrnabench-result-naive-baseline-vep-auprc; mrnabench-result-naive-mamba-vep-auprc; mrnabench-result-supervised-cnn-vep-auprc; mrnabench-result-3utrbert-vep-auprc; mrnabench-result-aido-rna-vep-auprc; mrnabench-result-dnabert-s-vep-auprc; mrnabench-result-dnabert2-vep-auprc; mrnabench-result-ernie-rna-vep-auprc; mrnabench-result-evo1-vep-auprc; mrnabench-result-evo2-vep-auprc; mrnabench-result-helix-mrna-vep-auprc; mrnabench-result-hyenadna-vep-auprc; mrnabench-result-nt-vep-auprc; mrnabench-result-orthrus-vep-auprc; mrnabench-result-rna-fm-vep-auprc; mrnabench-result-rna-msm-vep-auprc; mrnabench-result-rnabert-vep-auprc; mrnabench-result-rnaernie-vep-auprc; mrnabench-result-rinalmo-vep-auprc; mrnabench-result-splicebert-vep-auprc; mrnabench-result-utr-lm-vep-auprc; source ids: expansion-p3-mrnabench-2025; source locator: Table 2, column(VEP); context: Every method mRNABench reports on Variant effect prediction, scored with AUPRC (%) on mRNABench VEP.; caveats: Author-reported numbers, source checked but not independently reproduced.; Metrics alternate between AUPRC on a percentage scale and Pearson R, so figures in different columns are on different scales.; Each row is the best checkpoint of a model family, chosen by the authors, not the family's average.; review: method: automated_source_review; date: 2026-09-18

Related records

part of: mRNABench
subject: mRNABench VEP: part of discovery-benchmark-mrnabench
benchmark: 3UTRBERT on mRNABench VEP: Variant effect prediction
benchmark: AIDO.RNA on mRNABench VEP: Variant effect prediction
benchmark: DNABERT-S on mRNABench VEP: Variant effect prediction
benchmark: DNABERT2 on mRNABench VEP: Variant effect prediction
benchmark: ERNIE-RNA on mRNABench VEP: Variant effect prediction
benchmark: Evo1 on mRNABench VEP: Variant effect prediction
benchmark: Evo2 on mRNABench VEP: Variant effect prediction
benchmark: Helix-mRNA on mRNABench VEP: Variant effect prediction
benchmark: HyenaDNA on mRNABench VEP: Variant effect prediction
benchmark: Naive Baseline on mRNABench VEP: Variant effect prediction
benchmark: Naive Mamba on mRNABench VEP: Variant effect prediction
benchmark: NT on mRNABench VEP: Variant effect prediction
benchmark: Orthrus on mRNABench VEP: Variant effect prediction
benchmark: RiNALMo on mRNABench VEP: Variant effect prediction
benchmark: RNA-FM on mRNABench VEP: Variant effect prediction
benchmark: RNA-MSM on mRNABench VEP: Variant effect prediction
benchmark: RNABERT on mRNABench VEP: Variant effect prediction
benchmark: RNAErnie on mRNABench VEP: Variant effect prediction
benchmark: SpliceBERT on mRNABench VEP: Variant effect prediction
benchmark: Supervised CNN on mRNABench VEP: Variant effect prediction
benchmark: UTR-LM on mRNABench VEP: Variant effect prediction

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