Viral sequence detection evaluates a classifier on temporally separated reference-genome collections.
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
| Property | Description and evidence |
|---|---|
| Datasets | NCBI viral RefSeq and prokaryotic-host reference sequences.SourcesDETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes · Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions |
| Splits | The downstream classifier uses earlier records for training, an intermediate period for validation and later records for testing.SourcesDETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes · Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions |
| Metrics | Confusion-matrix measures include recall, accuracy, precision and F1.SourcesDETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes · Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions |
| Baselines | DeepVirFinder, PPR-Meta and CHEER on the temporal and CAMI marine test settings.SourcesDETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes · Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions |
| Leakage controls | The embedding stage uses the broader reference collection spanning the later evaluation period; downstream temporal separation alone is not an end-to-end temporal exclusion guarantee.SourcesDETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes · Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions |
| Uncertainty | The cited text-accessible evaluation sections give no confidence-interval, resampling or repeat-run error-bar specification. Image-only tables and uninspected supplements are outside this absence claim. · Not reported in inspected sourcesSourcesDETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes · Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions |
| Entity type | Paper-specific computational evaluation protocol.SourcesDETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes · Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions |
| Organisms | Viruses and prokaryotic hosts from NCBI reference sequences.SourcesDETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes · Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions |
| Assays | Reference-derived viral/nonviral labels.SourcesDETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes · Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions |
| Allowed inputs | Nucleotide sequence fragments.SourcesDETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes · Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions |
| Adaptation | A downstream classifier uses temporal partitions; sequence embedding was trained on a broader corpus.SourcesDETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes · Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions |
Conceptual summary of the cited evaluation; exact task configuration and source version remain part of the protocol.
NCBI viral RefSeq and prokaryotic-host reference sequences. The downstream classifier uses earlier records for training, an intermediate period for validation and later records for testing. Confusion-matrix measures include recall, accuracy, precision and F1. DeepVirFinder, PPR-Meta and CHEER on the temporal and CAMI marine test settings. The embedding stage uses the broader reference collection spanning the later evaluation period; downstream temporal separation alone is not an end-to-end temporal exclusion guarantee. The cited text-accessible evaluation sections give no confidence-interval, resampling or repeat-run error-bar specification. Image-only tables and uninspected supplements are outside this absence claim.
Each evaluation records what was tested and under which conditions.
Release 2026-09-17-d277315f7d76 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| DETIRE: viral sequence detection Hybrid deep learning virus-fragment classifier on paper testing dataset Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.8772 accuracy Unit: fraction · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedDETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes · Table 1, Accuracy row, DETIRE column Source checking is not independent reproduction. |
Last literature check: 2026-09-17. Dated primary-source discovery and protocol/table screening. Source checking does not mean experimental reproduction. Only separately extracted and independently reviewed numeric batches are publishable.
| Paper or primary resource | Version | Reference |
|---|---|---|
| DETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes | PMC archival version PMC10313334.1 | Read source |
primary comparison tables located
Task-specific computational methodology and field context checked in the cited primary-source artifact. Source-backed fields, inapplicable evaluator dimensions and unresolved details are distinguished. Numerical results were not reproduced.
Stable record: reported-task-3d4dec23120fefTrace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
18 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Diagram caption Conceptual summary of the cited evaluation; exact task configuration and source version remain part of the protocol. Individual claims | DETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions Version: PMC archival version PMC10313334.1 | source checked automated source review · 2026-09-16 Audit detailsTask-specific computational methodology and field context checked in the cited primary-source artifact. Source-backed fields, inapplicable evaluator dimensions and unresolved details are distinguished. Numerical results were not reproduced. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Diagram steps ["Input: Nucleotide sequence fragments.","Evaluation: A downstream classifier uses temporal partitions; sequence embedding was trained on a broader corpus.","Readout: Confusion-matrix measures include recall, accuracy, precision and F1."] Individual claims | DETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions Version: PMC archival version PMC10313334.1 | source checked automated source review · 2026-09-16 Audit detailsTask-specific computational methodology and field context checked in the cited primary-source artifact. Source-backed fields, inapplicable evaluator dimensions and unresolved details are distinguished. Numerical results were not reproduced. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Diagram title Computational evaluation flow Individual claims | DETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions Version: PMC archival version PMC10313334.1 | source checked automated source review · 2026-09-16 Audit detailsTask-specific computational methodology and field context checked in the cited primary-source artifact. Source-backed fields, inapplicable evaluator dimensions and unresolved details are distinguished. Numerical results were not reproduced. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Datasets NCBI viral RefSeq and prokaryotic-host reference sequences. Individual claims | DETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions Version: PMC archival version PMC10313334.1 | source checked automated source review · 2026-09-16 Audit detailsTask-specific computational methodology and field context checked in the cited primary-source artifact. Source-backed fields, inapplicable evaluator dimensions and unresolved details are distinguished. Numerical results were not reproduced. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Splits The downstream classifier uses earlier records for training, an intermediate period for validation and later records for testing. Individual claims | DETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions Version: PMC archival version PMC10313334.1 | source checked automated source review · 2026-09-16 Audit detailsTask-specific computational methodology and field context checked in the cited primary-source artifact. Source-backed fields, inapplicable evaluator dimensions and unresolved details are distinguished. Numerical results were not reproduced. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Adaptation A downstream classifier uses temporal partitions; sequence embedding was trained on a broader corpus. Individual claims | DETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions Version: PMC archival version PMC10313334.1 | source checked automated source review · 2026-09-16 Audit detailsTask-specific computational methodology and field context checked in the cited primary-source artifact. Source-backed fields, inapplicable evaluator dimensions and unresolved details are distinguished. Numerical results were not reproduced. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Metrics Confusion-matrix measures include recall, accuracy, precision and F1. Individual claims | DETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions Version: PMC archival version PMC10313334.1 | source checked automated source review · 2026-09-16 Audit detailsTask-specific computational methodology and field context checked in the cited primary-source artifact. Source-backed fields, inapplicable evaluator dimensions and unresolved details are distinguished. Numerical results were not reproduced. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Baselines DeepVirFinder, PPR-Meta and CHEER on the temporal and CAMI marine test settings. Individual claims | DETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions Version: PMC archival version PMC10313334.1 | source checked automated source review · 2026-09-16 Audit detailsTask-specific computational methodology and field context checked in the cited primary-source artifact. Source-backed fields, inapplicable evaluator dimensions and unresolved details are distinguished. Numerical results were not reproduced. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Leakage controls The embedding stage uses the broader reference collection spanning the later evaluation period; downstream temporal separation alone is not an end-to-end temporal exclusion guarantee. Individual claims | DETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions Version: PMC archival version PMC10313334.1 | source checked automated source review · 2026-09-16 Audit detailsTask-specific computational methodology and field context checked in the cited primary-source artifact. Source-backed fields, inapplicable evaluator dimensions and unresolved details are distinguished. Numerical results were not reproduced. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Uncertainty The cited text-accessible evaluation sections give no confidence-interval, resampling or repeat-run error-bar specification. Image-only tables and uninspected supplements are outside this absence claim. Individual claims | DETIRE: a hybrid deep learning model for identifying viral sequences from metagenomes Methods §§2.1, 2.3; cached text lines 11–12, 19–20; matching task comparison table/ablation captions Version: PMC archival version PMC10313334.1 | unreported automated source review · 2026-09-16 Audit detailsTask-specific computational methodology and field context checked in the cited primary-source artifact. Source-backed fields, inapplicable evaluator dimensions and unresolved details are distinguished. Numerical results were not reproduced. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-09-17-d277315f7d76 · Record review: needs review
Stable ID: reported-task-3d4dec23120fef