This paper-specific evaluation tests Gene-regulatory link prediction using hESC cell-type-specific GRN.
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Paper-specific task; protocol incompletely extractedPrediction of Gene Regulatory Connections with Joint Single-Cell Foundation Models and Graph-Based Learning · Table 2, scRegNet (w/ Geneformer) row, hESC AUROC entry; Table 2, scRegNet (w/ scBERT) row, hESC AUROC entry |
| Inputs | hESC cell-type-specific GRNPrediction of Gene Regulatory Connections with Joint Single-Cell Foundation Models and Graph-Based Learning · Table 2, scRegNet (w/ Geneformer) row, hESC AUROC entry; Table 2, scRegNet (w/ scBERT) row, hESC AUROC entry |
| Assessment | AUROCPrediction of Gene Regulatory Connections with Joint Single-Cell Foundation Models and Graph-Based Learning · Table 2, scRegNet (w/ Geneformer) row, hESC AUROC entry; Table 2, scRegNet (w/ scBERT) row, hESC AUROC entry |
| Recorded split or evaluation setting | UnextractedPrediction of Gene Regulatory Connections with Joint Single-Cell Foundation Models and Graph-Based Learning · Table 2, scRegNet (w/ Geneformer) row, hESC AUROC entry; Table 2, scRegNet (w/ scBERT) row, hESC AUROC entry |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.
The existing paper extraction describes: TFs plus 500 variable genes; mean from 50 independent evaluations. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.
Prediction of Gene Regulatory Connections with Joint Single-Cell Foundation Models and Graph-Based Learning · Table 2, scRegNet (w/ Geneformer) row, hESC AUROC entry; Table 2, scRegNet (w/ scBERT) row, hESC AUROC entryRelease 2026-09-16-d74d282221a9 · 2 evaluations · 2 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| scRegNet (Geneformer backbone): Gene-regulatory link prediction Model: scRegNet (Geneformer backbone) · Benchmark: Gene-regulatory link prediction · Dataset: hESC cell-type-specific GRN TFs plus 500 variable genes; mean from 50 independent evaluations. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.89 AUROC Unit: unitless · Direction: unknown | Uncertainty: ± 0.00 as printed Scored: Not reported · Eligible: Not reported | source checkedPrediction of Gene Regulatory Connections with Joint Single-Cell Foundation Models and Graph-Based Learning · Table 2, scRegNet (w/ Geneformer) row, hESC AUROC entry Source checking is not independent reproduction. |
| scRegNet (scBERT backbone): Gene-regulatory link prediction Model: scRegNet (scBERT backbone) · Benchmark: Gene-regulatory link prediction · Dataset: hESC cell-type-specific GRN TFs plus 500 variable genes; mean from 50 independent evaluations. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.88 AUROC Unit: unitless · Direction: unknown | Uncertainty: ± 0.00 as printed Scored: Not reported · Eligible: Not reported | source checkedPrediction of Gene Regulatory Connections with Joint Single-Cell Foundation Models and Graph-Based Learning · Table 2, scRegNet (w/ scBERT) row, hESC AUROC entry Source checking is not independent reproduction. |
Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.
Stable record: reported-task-3063ed4da76b4bRelease 2026-09-16-d74d282221a9 · Record review: needs review
Stable ID: reported-task-3063ed4da76b4b