This paper-specific evaluation tests Simulated metagenome virus-taxon retrieval using Simulated viral metagenome.
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Paper-specific task; protocol incompletely extractedNovel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types · Table 1, Lazypipe-nt / Genus row, F column; Table 1, Kraken2 / Genus row, F column |
| Inputs | Simulated viral metagenomeNovel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types · Table 1, Lazypipe-nt / Genus row, F column; Table 1, Kraken2 / Genus row, F column |
| Assessment | Genus-level F1Novel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types · Table 1, Lazypipe-nt / Genus row, F column; Table 1, Kraken2 / Genus row, F column |
| Recorded split or evaluation setting | UnextractedNovel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types · Table 1, Lazypipe-nt / Genus row, F column; Table 1, Kraken2 / Genus row, F column |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.
The existing paper extraction describes: Genus-rank viral taxon retrieval. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.
Novel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types · Table 1, Lazypipe-nt / Genus row, F column; Table 1, Kraken2 / Genus row, F columnRelease 2026-09-16-d74d282221a9 · 2 evaluations · 2 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Lazypipe-nt: Simulated metagenome virus-taxon retrieval Model: Lazypipe-nt · Benchmark: Simulated metagenome virus-taxon retrieval · Dataset: Simulated viral metagenome Genus-rank viral taxon retrieval. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.932 Genus-level F1 Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedNovel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types · Table 1, Lazypipe-nt / Genus row, F column Source checking is not independent reproduction. |
| Kraken2: Simulated metagenome virus-taxon retrieval Model: Kraken2 · Benchmark: Simulated metagenome virus-taxon retrieval · Dataset: Simulated viral metagenome Genus-rank viral taxon retrieval. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.627 Genus-level F1 Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedNovel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types · Table 1, Kraken2 / Genus row, F column Source checking is not independent reproduction. |
Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.
Stable record: reported-task-369dcfef14c4a9Release 2026-09-16-d74d282221a9 · Record review: needs review
Stable ID: reported-task-369dcfef14c4a9