result · source checked
0.627 Genus-level F1
Kraken2 · Genus-level F1 · Simulated viral metagenome
- Tested model
- Kraken2
- Task or benchmark
- Simulated metagenome virus-taxon retrieval
- Dataset
- Simulated viral metagenome
- Procedure
- Genus-rank viral taxon retrieval.
- Evaluation
- Kraken2: Simulated metagenome virus-taxon retrieval
- Evidence
- Independent external evaluation · source checkedNovel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types · Table 1, Kraken2 / Genus row, F column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Kraken2: Simulated metagenome virus-taxon retrieval Model: Kraken2 · Benchmark: Simulated metagenome virus-taxon retrieval · Dataset: Simulated viral metagenome Genus-rank viral taxon retrieval. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.627 Genus-level F1 Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedNovel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types · Table 1, Kraken2 / Genus row, F column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: source checked
- Novel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types · Original source · version of record
Technical metadata and extraction receipts
Stable ID: lit-b3-022
- areas
- microbes-communities
- tasks
- Simulated metagenome virus-taxon retrieval
- printed value
- 0.627
- numeric value
- 0.627
- metric
- Genus-level F1
- metric direction
- unknown
- unit
- unitless
- uncertainty
- Not reported
- source locator
- Table 1, Kraken2 / Genus row, F column
- review
- method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:44:03.413635+00:00; notes: First Genus block selected using rank row span, not Species. Final F column is F score, not precision or recall. Source check verifies central value and table context, not experiment reproduction or all metadata.; evidence: {"table_xml_id": "veaa091-T1", "row_cells": ["Kraken2", "21", "1", "24", "0.955", "0.467", "0.627"], "selected_cell_zero_based": -1, "selected_cell_xml": "<td rowspan=\"1\" colspan=\"1\">0.627</td>", "caption": "Accessing accuracy of virus taxon retrieval by different tools."}; artifact sha256: 77842d8e4f6b419e331ab5a01fdf8f9eb8604f259425d79602be896aad3d0ad1; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC7772471/fullTextXML
- legacy id
- lit-b3-022
- legacy row
- id: lit-b3-022; paper id: lazypipe-2020; domain id: microbes-communities; task: Simulated metagenome virus-taxon retrieval; model: Kraken2; model version: Not reported; dataset: Simulated viral metagenome; dataset version: Not reported; split: Not reported; metric: Genus-level F1; value: 0.627; unit: unitless; uncertainty: Not reported; protocol: Genus-rank viral taxon retrieval.; source locator: Table 1, Kraken2 / Genus row, F column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC7772471/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:29:32Z
- missing metadata
- model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract