This paper-specific evaluation tests E. coli sigma70 promoter prediction using E. coli sigma70 promoter dataset.
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Paper-specific task; protocol incompletely extractedProkBERT family: genomic language models for microbiome applications · Table 3, ProkBERT-mini row, Accuracy column; Table 3, Promotech row, Accuracy column |
| Inputs | E. coli sigma70 promoter datasetProkBERT family: genomic language models for microbiome applications · Table 3, ProkBERT-mini row, Accuracy column; Table 3, Promotech row, Accuracy column |
| Assessment | AccuracyProkBERT family: genomic language models for microbiome applications · Table 3, ProkBERT-mini row, Accuracy column; Table 3, Promotech row, Accuracy column |
| Recorded split or evaluation setting | UnextractedProkBERT family: genomic language models for microbiome applications · Table 3, ProkBERT-mini row, Accuracy column; Table 3, Promotech row, Accuracy column |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.
The existing paper extraction describes: Promoter versus non-promoter classification. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.
ProkBERT family: genomic language models for microbiome applications · Table 3, ProkBERT-mini row, Accuracy column; Table 3, Promotech row, Accuracy columnRelease 2026-09-16-d74d282221a9 · 2 evaluations · 2 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| ProkBERT-mini: E. coli sigma70 promoter prediction Model: ProkBERT-mini · Benchmark: E. coli sigma70 promoter prediction · Dataset: E. coli sigma70 promoter dataset Promoter versus non-promoter classification. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.87 Accuracy Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedProkBERT family: genomic language models for microbiome applications · Table 3, ProkBERT-mini row, Accuracy column Source checking is not independent reproduction. |
| Promotech: E. coli sigma70 promoter prediction Model: Promotech · Benchmark: E. coli sigma70 promoter prediction · Dataset: E. coli sigma70 promoter dataset Promoter versus non-promoter classification. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.71 Accuracy Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedProkBERT family: genomic language models for microbiome applications · Table 3, Promotech row, Accuracy column Source checking is not independent reproduction. |
Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.
Stable record: reported-task-3891811dcce8b3Release 2026-09-16-d74d282221a9 · Record review: needs review
Stable ID: reported-task-3891811dcce8b3