This paper-specific evaluation tests Cell-type identification using M.S. single-cell dataset.
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Paper-specific task; protocol incompletely extractedParameter-Efficient Fine-Tuning Enhances Adaptation of Single Cell Large Language Model for Cell Type Identification · Table 2, M.S. / scGPT row, F1-Score column; Table 2, M.S. / Geneformer row, F1-Score column |
| Inputs | M.S. single-cell datasetParameter-Efficient Fine-Tuning Enhances Adaptation of Single Cell Large Language Model for Cell Type Identification · Table 2, M.S. / scGPT row, F1-Score column; Table 2, M.S. / Geneformer row, F1-Score column |
| Assessment | F1-ScoreParameter-Efficient Fine-Tuning Enhances Adaptation of Single Cell Large Language Model for Cell Type Identification · Table 2, M.S. / scGPT row, F1-Score column; Table 2, M.S. / Geneformer row, F1-Score column |
| Recorded split or evaluation setting | UnextractedParameter-Efficient Fine-Tuning Enhances Adaptation of Single Cell Large Language Model for Cell Type Identification · Table 2, M.S. / scGPT row, F1-Score column; Table 2, M.S. / Geneformer row, F1-Score column |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.
The existing paper extraction describes: Native scLLM cell-type identification as reported in Table 2. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.
Parameter-Efficient Fine-Tuning Enhances Adaptation of Single Cell Large Language Model for Cell Type Identification · Table 2, M.S. / scGPT row, F1-Score column; Table 2, M.S. / Geneformer row, F1-Score columnRelease 2026-09-16-d74d282221a9 · 2 evaluations · 2 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| scGPT: Cell-type identification Native scLLM cell-type identification as reported in Table 2. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.734 F1-Score Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedParameter-Efficient Fine-Tuning Enhances Adaptation of Single Cell Large Language Model for Cell Type Identification · Table 2, M.S. / scGPT row, F1-Score column Source checking is not independent reproduction. |
| Geneformer: Cell-type identification Native scLLM cell-type identification as reported in Table 2. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.388 F1-Score Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedParameter-Efficient Fine-Tuning Enhances Adaptation of Single Cell Large Language Model for Cell Type Identification · Table 2, M.S. / Geneformer row, F1-Score column Source checking is not independent reproduction. |
Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.
Stable record: reported-task-5b929593eefc76Release 2026-09-16-d74d282221a9 · Record review: needs review
Stable ID: reported-task-5b929593eefc76