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benchmark · task

RNA secondary structure

This paper-specific evaluation tests RNA secondary structure using RNA8F.

2 evaluations · 2 metric rows

At a glance

Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.

Data, procedure and scoring
PropertyDescription and evidence
Record typePaper-specific task; protocol incompletely extractedRNA secondary structure prediction by conducting multi-class classifications · Table 2, TU-Fold (aug) row, Overall F1 column; Table 2, UFold row, Overall F1 column
InputsRNA8FRNA secondary structure prediction by conducting multi-class classifications · Table 2, TU-Fold (aug) row, Overall F1 column; Table 2, UFold row, Overall F1 column
AssessmentF1RNA secondary structure prediction by conducting multi-class classifications · Table 2, TU-Fold (aug) row, Overall F1 column; Table 2, UFold row, Overall F1 column
Recorded split or evaluation settingUnextractedRNA secondary structure prediction by conducting multi-class classifications · Table 2, TU-Fold (aug) row, Overall F1 column; Table 2, UFold row, Overall F1 column
DatasetsNot extracted or verified for this record.
OrganismsNot extracted or verified for this record.
AssaysNot extracted or verified for this record.
AdaptationNot extracted or verified for this record.
BaselinesNot extracted or verified for this record.

How it works

Reported evaluation outline

Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.

Reported evaluation outlineRNA8F. Then: Recorded fitting or scoring procedure. Then: Assess F1RNA8FRecorded fitting or scoringprocedureAssess F1
Read the diagram as text
  1. RNA8F
  2. Recorded fitting or scoring procedure
  3. Assess F1
RNA secondary structure prediction by conducting multi-class classifications · Table 2, TU-Fold (aug) row, Overall F1 column; Table 2, UFold row, Overall F1 column

Evaluation context

The existing paper extraction describes: Three-fold training and evaluation; source reports mean and standard deviation. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.

RNA secondary structure prediction by conducting multi-class classifications · Table 2, TU-Fold (aug) row, Overall F1 column; Table 2, UFold row, Overall F1 column

Tested models and results

Release 2026-09-16-d74d282221a9 · 2 evaluations · 2 metric rows. Different protocols are not a single leaderboard.

Results grouped by the exact reported evaluation
Metric and findingCoverage and uncertaintyEvidence
TU-Fold (aug): RNA secondary structure

Three-fold training and evaluation; source reports mean and standard deviation.

Author-reported evaluation · Evaluation metadata: needs review

0.947 F1

Unit: unitless · Direction: unknown

Uncertainty: ± 0.002 standard deviation

Scored: Not reported · Eligible: Not reported

source checkedRNA secondary structure prediction by conducting multi-class classifications · Table 2, TU-Fold (aug) row, Overall F1 column

Source checking is not independent reproduction.

UFold: RNA secondary structure

Three-fold training and evaluation; source reports mean and standard deviation.

Independent external evaluation · Evaluation metadata: needs review

0.938 F1

Unit: unitless · Direction: unknown

Uncertainty: ± 0.004 standard deviation

Scored: Not reported · Eligible: Not reported

source checkedRNA secondary structure prediction by conducting multi-class classifications · Table 2, UFold row, Overall F1 column

Source checking is not independent reproduction.

Strengths and limitations

Profile review details

Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.

Stable record: reported-task-5ec7581b246ea6

Sources and history

Release 2026-09-16-d74d282221a9 · Record review: needs review

Download this release
Technical metadata and extraction receipts

Stable ID: reported-task-5ec7581b246ea6

areas
rna-transcriptomes
tasks
RNA secondary structure
entity level
task
version
Not reported
task
RNA secondary structure
scope note
Paper-specific evaluation task; protocol completeness requires further extraction.
missing metadata
protocol version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract
Related records

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