This paper-specific evaluation tests Long-read taxonomic profiling using Zymo LOG 10%.
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Paper-specific task; protocol incompletely extractedLightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Table 3, LOG 10% / Lemur row, F1 column; Table 3, LOG 10% / Kraken 2 row, F1 column |
| Inputs | Zymo LOG 10%Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Table 3, LOG 10% / Lemur row, F1 column; Table 3, LOG 10% / Kraken 2 row, F1 column |
| Assessment | F1Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Table 3, LOG 10% / Lemur row, F1 column; Table 3, LOG 10% / Kraken 2 row, F1 column |
| Recorded split or evaluation setting | UnextractedLightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Table 3, LOG 10% / Lemur row, F1 column; Table 3, LOG 10% / Kraken 2 row, F1 column |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.
The existing paper extraction describes: Mean across five replicate runs on Zymo LOG 10%. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.
Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Table 3, LOG 10% / Lemur row, F1 column; Table 3, LOG 10% / Kraken 2 row, F1 columnRelease 2026-09-16-d74d282221a9 · 2 evaluations · 2 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Lemur: Long-read taxonomic profiling Mean across five replicate runs on Zymo LOG 10%. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.376 F1 Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedLightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Table 3, LOG 10% / Lemur row, F1 column Source checking is not independent reproduction. |
| Kraken 2: Long-read taxonomic profiling Mean across five replicate runs on Zymo LOG 10%. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.375 F1 Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedLightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Table 3, LOG 10% / Kraken 2 row, F1 column Source checking is not independent reproduction. |
Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.
Stable record: reported-task-6330d593980b5bRelease 2026-09-16-d74d282221a9 · Record review: needs review
Stable ID: reported-task-6330d593980b5b