result · source checked
0.375 F1
Kraken 2 · F1 · Zymo LOG 10%
- Tested model
- Kraken 2
- Task or benchmark
- Long-read taxonomic profiling
- Dataset
- Zymo LOG 10%
- Procedure
- Mean across five replicate runs on Zymo LOG 10%.
- Evaluation
- Kraken 2: Long-read taxonomic profiling
- Evidence
- Independent external evaluation · source checkedLightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Table 3, LOG 10% / Kraken 2 row, F1 column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Kraken 2: Long-read taxonomic profiling Mean across five replicate runs on Zymo LOG 10%. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.375 F1 Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedLightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Table 3, LOG 10% / Kraken 2 row, F1 column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: source checked
- Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Original source · PMC archival version PMC11185576.2
Technical metadata and extraction receipts
Stable ID: lit-b3-032
- areas
- microbes-communities
- tasks
- Long-read taxonomic profiling
- printed value
- 0.375
- numeric value
- 0.375
- metric
- F1
- metric direction
- unknown
- unit
- unitless
- uncertainty
- Not reported
- source locator
- Table 3, LOG 10% / Kraken 2 row, F1 column
- review
- method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:44:03.421888+00:00; notes: LOG 10% first block, F1 column. Kraken 2 row inherits dataset via rowspan; not LOG 75% or abundance Spearman. Source check verifies central value and table context, not experiment reproduction or all metadata.; evidence: {"table_xml_id": "T3", "row_cells": ["Kraken 2", "0.760", "0.249", "0.375", "0.910"], "selected_cell_zero_based": 3, "selected_cell_xml": "<td align=\"right\" valign=\"top\" rowspan=\"1\" colspan=\"1\">0.375</td>", "caption": "Mean performance and standard deviation across 5 replicate runs of all methods on Zymo LOG, bold values show best performance. Magnet does not report relative abundance, so the Spearman’s ρ cannot be computed. Tools listed below the horizontal dashed lines (for LOG 10% and LOG 75%) focus on the taxonomic classification of reads."}; artifact sha256: 4afb9195da447916eb6f733816e3640741c7ade08ea8920d205c3be7b3cce27a; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC11185576/fullTextXML
- legacy id
- lit-b3-032
- legacy row
- id: lit-b3-032; paper id: lemur-magnet-2024; domain id: microbes-communities; task: Long-read taxonomic profiling; model: Kraken 2; model version: Not reported; dataset: Zymo LOG 10%; dataset version: Not reported; split: Not reported; metric: F1; value: 0.375; unit: unitless; uncertainty: Not reported; protocol: Mean across five replicate runs on Zymo LOG 10%.; source locator: Table 3, LOG 10% / Kraken 2 row, F1 column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11185576/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:29:32Z
- missing metadata
- model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract
Related records
- evaluation: Kraken 2: Long-read taxonomic profiling
- subject: Reported F1 for Kraken 2