This paper-specific evaluation tests Human 5mC detection using Human 5mC.
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Paper-specific task; protocol incompletely extractedBenchmarking DNA foundation models for genomic and genetic tasks · Table 3, Human 5mC row, Caduceus-Ph column; Table 3, Human 5mC row, NT-v2 column |
| Inputs | Human 5mCBenchmarking DNA foundation models for genomic and genetic tasks · Table 3, Human 5mC row, Caduceus-Ph column; Table 3, Human 5mC row, NT-v2 column |
| Assessment | AUCBenchmarking DNA foundation models for genomic and genetic tasks · Table 3, Human 5mC row, Caduceus-Ph column; Table 3, Human 5mC row, NT-v2 column |
| Recorded split or evaluation setting | UnextractedBenchmarking DNA foundation models for genomic and genetic tasks · Table 3, Human 5mC row, Caduceus-Ph column; Table 3, Human 5mC row, NT-v2 column |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.
The existing paper extraction describes: Binary epigenetic-modification classification as reported in the paper. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.
Benchmarking DNA foundation models for genomic and genetic tasks · Table 3, Human 5mC row, Caduceus-Ph column; Table 3, Human 5mC row, NT-v2 columnRelease 2026-09-16-d74d282221a9 · 2 evaluations · 2 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Caduceus-Ph: Human 5mC detection Binary epigenetic-modification classification as reported in the paper. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.783 AUC Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedBenchmarking DNA foundation models for genomic and genetic tasks · Table 3, Human 5mC row, Caduceus-Ph column Source checking is not independent reproduction. |
| NT-v2: Human 5mC detection Binary epigenetic-modification classification as reported in the paper. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.7377 AUC Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedBenchmarking DNA foundation models for genomic and genetic tasks · Table 3, Human 5mC row, NT-v2 column Source checking is not independent reproduction. |
Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.
Stable record: reported-task-988ff78f86471eRelease 2026-09-16-d74d282221a9 · Record review: needs review
Download this releaseStable ID: reported-task-988ff78f86471e