result · source checked

0.783 AUC

Caduceus-Ph · AUC · Human 5mC

Tested model: Caduceus-Ph
Task or benchmark: Human 5mC detection
Dataset: Human 5mC
Procedure: Binary epigenetic-modification classification as reported in the paper.
Evaluation: Caduceus-Ph: Human 5mC detection
Evidence: Independent external evaluation · source checkedBenchmarking DNA foundation models for genomic and genetic tasks · Table 3, Human 5mC row, Caduceus-Ph column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Evaluation results

Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.

Evaluated configurationMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
Caduceus-Ph: Human 5mC detection Model: Caduceus-Ph · Benchmark: Human 5mC detection · Dataset: Human 5mC Binary epigenetic-modification classification as reported in the paper. Independent external evaluation · Evaluation metadata: needs review
0.783 AUC Unit: unitless · Direction: unknown	Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported	source checkedBenchmarking DNA foundation models for genomic and genetic tasks · Table 3, Human 5mC row, Caduceus-Ph column Source checking is not independent reproduction.

Sources and history

Release 2026-09-16-d74d282221a9 · Record review: source checked

Benchmarking DNA foundation models for genomic and genetic tasks · Original source · PMC12663285.1

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Technical metadata and extraction receipts

Stable ID: lit-001

areas: dna-genomes
tasks: Human 5mC detection
printed value: 0.783
numeric value: 0.783
metric: AUC
metric direction: unknown
unit: unitless
uncertainty: Not reported
source locator: Table 3, Human 5mC row, Caduceus-Ph column
review: method: primary_xml_exact_label_cell_check; reviewer: rewire deterministic table checker v1; reviewed at: 2026-09-16T10:33:35.327Z; notes: Exact row/header labels and numeric cell matched. Check verifies transcription, not experimental correctness.; evidence: Table 3, Human 5mC row, Caduceus-Ph column; cell: 0.783; artifact sha256: 5d8ca9bcf88cc1b38ad667906a2e4699b1aefa6d31c6f49259784930353f3202; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12663285/fullTextXML
legacy id: lit-001
legacy row: id: lit-001; paper id: dna-foundation-models-2025; domain id: dna-genomes; task: Human 5mC detection; model: Caduceus-Ph; model version: Not reported; dataset: Human 5mC; dataset version: Not reported; split: Not reported; metric: AUC; value: 0.783; unit: unitless; uncertainty: Not reported; protocol: Binary epigenetic-modification classification as reported in the paper.; source locator: Table 3, Human 5mC row, Caduceus-Ph column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC12663285/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:25:00Z
missing metadata: model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract

Related records

evaluation: Caduceus-Ph: Human 5mC detection
subject: Reported AUC for Caduceus-Ph

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