benchmark · task

transcription-factor DNA binding-site prediction

This paper-specific evaluation tests transcription-factor DNA binding-site prediction using genome-wide TF binding sites.

1 evaluations · 1 metric rows

At a glance

Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.

Data, procedure and scoring
Property	Description and evidence
Record type	Paper-specific task; protocol incompletely extractedIntegrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2, TransBind row, AUROC column
Inputs	genome-wide TF binding sitesIntegrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2, TransBind row, AUROC column
Assessment	AUROCIntegrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2, TransBind row, AUROC column
Recorded split or evaluation setting	testIntegrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2, TransBind row, AUROC column
Datasets	Not extracted or verified for this record.
Organisms	Not extracted or verified for this record.
Assays	Not extracted or verified for this record.
Adaptation	Not extracted or verified for this record.
Baselines	Not extracted or verified for this record.

How it works

Reported evaluation outline

Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.

Read the diagram as text

genome-wide TF binding sites
Recorded fitting or scoring procedure
Assess AUROC

Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2, TransBind row, AUROC column

Evaluation context

The existing paper extraction describes: Integrates protein and DNA embeddings for TFBS prediction on paper test dataset. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.

Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2, TransBind row, AUROC column

Tested models and results

Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.

Evaluated configurationMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
TransBind: transcription-factor DNA binding-site prediction Model: TransBind · Benchmark: transcription-factor DNA binding-site prediction · Dataset: genome-wide TF binding sites Integrates protein and DNA embeddings for TFBS prediction on paper test dataset Author-reported evaluation · Evaluation metadata: needs review
0.9508 AUROC Unit: fraction · Direction: unknown	Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported	source checkedIntegrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2, TransBind row, AUROC column Source checking is not independent reproduction.

Strengths and limitations

Strengths and considerations

The linked evaluation identifies the paper-specific dataset and assessment rather than treating the task name as a universal benchmark.Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2, TransBind row, AUROC column

Limitations and conditions

The numerical table check does not establish the full data-processing, fitting or leakage-control protocol.Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2, TransBind row, AUROC column

Profile review details

Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.

Stable record: reported-task-ac191e878dff5e

Sources and history

Release 2026-09-16-d74d282221a9 · Record review: needs review

Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Original source · version of record

Download this release

Technical metadata and extraction receipts

Stable ID: reported-task-ac191e878dff5e

areas: molecular-interactions
tasks: transcription-factor DNA binding-site prediction
entity level: task
version: Not reported
task: transcription-factor DNA binding-site prediction
scope note: Paper-specific evaluation task; protocol completeness requires further extraction.
missing metadata: protocol version: not_reported_in_legacy_extract

Related records

dataset: genome-wide TF binding sites
benchmark: TransBind: transcription-factor DNA binding-site prediction

Suggest a correction