This paper-specific evaluation tests protein-small molecule binding-site prediction using SJC.
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Paper-specific task; protocol incompletely extractedProtein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning · Table 5, ESM-2 / SJC row, AUROC column |
| Inputs | SJCProtein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning · Table 5, ESM-2 / SJC row, AUROC column |
| Assessment | AUROCProtein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning · Table 5, ESM-2 / SJC row, AUROC column |
| Recorded split or evaluation setting | UnextractedProtein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning · Table 5, ESM-2 / SJC row, AUROC column |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.
The existing paper extraction describes: Contrastive CLAPE-SMB binding-site predictor with ESM-2 feature extractor. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.
Protein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning · Table 5, ESM-2 / SJC row, AUROC columnRelease 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| CLAPE-SMB with ESM-2: protein-small molecule binding-site prediction Model: CLAPE-SMB with ESM-2 · Benchmark: protein-small molecule binding-site prediction · Dataset: SJC Contrastive CLAPE-SMB binding-site predictor with ESM-2 feature extractor Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.917 AUROC Unit: fraction · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedProtein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning · Table 5, ESM-2 / SJC row, AUROC column Source checking is not independent reproduction. |
Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.
Stable record: reported-task-b181ed450cdd41Release 2026-09-16-d74d282221a9 · Record review: needs review
Stable ID: reported-task-b181ed450cdd41