This paper-specific evaluation tests regulatory sequence classification using genomic benchmark categories.
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Paper-specific task; protocol incompletely extractedThe impact of tokenizer selection in genomic language models · Table 2, Regulatory row, Caduceus (char) MCC column |
| Inputs | genomic benchmark categoriesThe impact of tokenizer selection in genomic language models · Table 2, Regulatory row, Caduceus (char) MCC column |
| Assessment | MCCThe impact of tokenizer selection in genomic language models · Table 2, Regulatory row, Caduceus (char) MCC column |
| Recorded split or evaluation setting | paper benchmark summaryThe impact of tokenizer selection in genomic language models · Table 2, Regulatory row, Caduceus (char) MCC column |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.
The existing paper extraction describes: task-category MCC across benchmark datasets. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.
The impact of tokenizer selection in genomic language models · Table 2, Regulatory row, Caduceus (char) MCC columnRelease 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Caduceus (character tokens): regulatory sequence classification Model: Caduceus (character tokens) · Benchmark: regulatory sequence classification · Dataset: genomic benchmark categories task-category MCC across benchmark datasets Independent external evaluation · Evaluation metadata: needs review | ||
| 0.778 MCC Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedThe impact of tokenizer selection in genomic language models · Table 2, Regulatory row, Caduceus (char) MCC column Source checking is not independent reproduction. |
Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.
Stable record: reported-task-cd127e56fb1f04Release 2026-09-16-d74d282221a9 · Record review: needs review
Stable ID: reported-task-cd127e56fb1f04