This paper-specific evaluation tests mRNA-protein interaction prediction using mRNA-RBP pairs.
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Paper-specific task; protocol incompletely extractedGeneralizable deep-learning-based mRNA-protein interaction prediction strongly depends on protein diversity · Table 2, RBP-aware test set row, auROC (%) column |
| Inputs | mRNA-RBP pairsGeneralizable deep-learning-based mRNA-protein interaction prediction strongly depends on protein diversity · Table 2, RBP-aware test set row, auROC (%) column |
| Assessment | AUROCGeneralizable deep-learning-based mRNA-protein interaction prediction strongly depends on protein diversity · Table 2, RBP-aware test set row, auROC (%) column |
| Recorded split or evaluation setting | RBP-aware test setGeneralizable deep-learning-based mRNA-protein interaction prediction strongly depends on protein diversity · Table 2, RBP-aware test set row, auROC (%) column |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.
The existing paper extraction describes: LLM encoding of protein partner; RBP-aware partition tests generalization to unseen protein diversity. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.
Generalizable deep-learning-based mRNA-protein interaction prediction strongly depends on protein diversity · Table 2, RBP-aware test set row, auROC (%) columnRelease 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| ProteinBERT LLM-encoding model: mRNA-protein interaction prediction Model: ProteinBERT LLM-encoding model · Benchmark: mRNA-protein interaction prediction · Dataset: mRNA-RBP pairs LLM encoding of protein partner; RBP-aware partition tests generalization to unseen protein diversity Author-reported evaluation · Evaluation metadata: needs review | ||
| 71.5% AUROC Unit: percent · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedGeneralizable deep-learning-based mRNA-protein interaction prediction strongly depends on protein diversity · Table 2, RBP-aware test set row, auROC (%) column Source checking is not independent reproduction. |
Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.
Stable record: reported-task-d7e6274011946eRelease 2026-09-16-d74d282221a9 · Record review: needs review
Stable ID: reported-task-d7e6274011946e