71.5% AUROC
ProteinBERT LLM-encoding model · AUROC · mRNA-RBP pairs
- Tested model
- ProteinBERT LLM-encoding model
- Task or benchmark
- mRNA-protein interaction prediction
- Dataset
- mRNA-RBP pairs
- Procedure
- LLM encoding of protein partner; RBP-aware partition tests generalization to unseen protein diversity
- Evaluation
- ProteinBERT LLM-encoding model: mRNA-protein interaction prediction
- Evidence
- Author-reported evaluation · source checkedGeneralizable deep-learning-based mRNA-protein interaction prediction strongly depends on protein diversity · Table 2, RBP-aware test set row, auROC (%) column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| ProteinBERT LLM-encoding model: mRNA-protein interaction prediction Model: ProteinBERT LLM-encoding model · Benchmark: mRNA-protein interaction prediction · Dataset: mRNA-RBP pairs LLM encoding of protein partner; RBP-aware partition tests generalization to unseen protein diversity Author-reported evaluation · Evaluation metadata: needs review | ||
| 71.5% AUROC Unit: percent · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedGeneralizable deep-learning-based mRNA-protein interaction prediction strongly depends on protein diversity · Table 2, RBP-aware test set row, auROC (%) column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: source checked
- Generalizable deep-learning-based mRNA-protein interaction prediction strongly depends on protein diversity · Original source · version of record
Technical metadata and extraction receipts
Stable ID: lit-b4-008
- areas
- rna-transcriptomes
- tasks
- mRNA-protein interaction prediction
- printed value
- 71.5
- numeric value
- 71.5
- metric
- AUROC
- metric direction
- unknown
- unit
- percent
- uncertainty
- Not reported
- source locator
- Table 2, RBP-aware test set row, auROC (%) column
- review
- method: primary_xml_exact_label_cell_check; reviewer: rewire deterministic table checker v1; reviewed at: 2026-09-16T10:33:57.257Z; notes: Exact row/header labels and numeric cell matched. Check verifies transcription, not experimental correctness.; evidence: Table 2, RBP-aware test set row, auROC (%) column; cell: 71.5; artifact sha256: 94f9fe22a5f0e6c8619e4af994eb4f6ded7417efcf0c1240380269280f97f9d1; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13235059/fullTextXML
- legacy id
- lit-b4-008
- legacy row
- id: lit-b4-008; paper id: mrna-protein-diversity-2026; domain id: rna-transcriptomes; task: mRNA-protein interaction prediction; model: ProteinBERT LLM-encoding model; model version: Not reported; dataset: mRNA-RBP pairs; dataset version: Not reported; split: RBP-aware test set; metric: AUROC; value: 71.5; unit: percent; uncertainty: Not reported; protocol: LLM encoding of protein partner; RBP-aware partition tests generalization to unseen protein diversity; source locator: Table 2, RBP-aware test set row, auROC (%) column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC13235059/; evaluation origin: author_reported; reviewed utc: 2026-09-15T23:37:05Z
- missing metadata
- model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract