This paper-specific evaluation tests Cross-platform scATAC cell-type annotation using MosA1 reference → WholeBrainA query.
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Paper-specific task; protocol incompletely extractedCell type annotation for scATAC-seq via DNA large language model and graph domain adaptation · Table 2, scLLMDA row, Ref: MosA1 / Q: WholeBrainA F1 column; Table 2, MINGLE row, Ref: MosA1 / Q: WholeBrainA F1 column |
| Inputs | MosA1 reference → WholeBrainA queryCell type annotation for scATAC-seq via DNA large language model and graph domain adaptation · Table 2, scLLMDA row, Ref: MosA1 / Q: WholeBrainA F1 column; Table 2, MINGLE row, Ref: MosA1 / Q: WholeBrainA F1 column |
| Assessment | F1Cell type annotation for scATAC-seq via DNA large language model and graph domain adaptation · Table 2, scLLMDA row, Ref: MosA1 / Q: WholeBrainA F1 column; Table 2, MINGLE row, Ref: MosA1 / Q: WholeBrainA F1 column |
| Recorded split or evaluation setting | UnextractedCell type annotation for scATAC-seq via DNA large language model and graph domain adaptation · Table 2, scLLMDA row, Ref: MosA1 / Q: WholeBrainA F1 column; Table 2, MINGLE row, Ref: MosA1 / Q: WholeBrainA F1 column |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.
The existing paper extraction describes: Cross-platform reference-query cell-type annotation.; Cross-platform reference-query comparator. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.
Cell type annotation for scATAC-seq via DNA large language model and graph domain adaptation · Table 2, scLLMDA row, Ref: MosA1 / Q: WholeBrainA F1 column; Table 2, MINGLE row, Ref: MosA1 / Q: WholeBrainA F1 columnRelease 2026-09-16-d74d282221a9 · 2 evaluations · 2 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| scLLMDA: Cross-platform scATAC cell-type annotation Model: scLLMDA · Benchmark: Cross-platform scATAC cell-type annotation · Dataset: MosA1 reference → WholeBrainA query Cross-platform reference-query cell-type annotation. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.6525 F1 Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedCell type annotation for scATAC-seq via DNA large language model and graph domain adaptation · Table 2, scLLMDA row, Ref: MosA1 / Q: WholeBrainA F1 column Source checking is not independent reproduction. |
| MINGLE: Cross-platform scATAC cell-type annotation Model: MINGLE · Benchmark: Cross-platform scATAC cell-type annotation · Dataset: MosA1 reference → WholeBrainA query Cross-platform reference-query comparator. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.6256 F1 Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedCell type annotation for scATAC-seq via DNA large language model and graph domain adaptation · Table 2, MINGLE row, Ref: MosA1 / Q: WholeBrainA F1 column Source checking is not independent reproduction. |
Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.
Stable record: reported-task-d82b6284f3f431Release 2026-09-16-d74d282221a9 · Record review: needs review
Stable ID: reported-task-d82b6284f3f431