rewire.it
result · source checked

0.6525 F1

scLLMDA · F1 · MosA1 reference → WholeBrainA query

Tested model
scLLMDA
Task or benchmark
Cross-platform scATAC cell-type annotation
Dataset
MosA1 reference → WholeBrainA query
Procedure
Cross-platform reference-query cell-type annotation.
Evaluation
scLLMDA: Cross-platform scATAC cell-type annotation
Evidence
Author-reported evaluation · source checkedCell type annotation for scATAC-seq via DNA large language model and graph domain adaptation · Table 2, scLLMDA row, Ref: MosA1 / Q: WholeBrainA F1 column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Evaluation results

Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.

Results grouped by the exact reported evaluation
Metric and findingCoverage and uncertaintyEvidence
scLLMDA: Cross-platform scATAC cell-type annotation
Model: scLLMDA · Benchmark: Cross-platform scATAC cell-type annotation · Dataset: MosA1 reference → WholeBrainA query

Cross-platform reference-query cell-type annotation.

Author-reported evaluation · Evaluation metadata: needs review

0.6525 F1

Unit: unitless · Direction: unknown

Uncertainty: not reported in legacy extract

Scored: Not reported · Eligible: Not reported

source checkedCell type annotation for scATAC-seq via DNA large language model and graph domain adaptation · Table 2, scLLMDA row, Ref: MosA1 / Q: WholeBrainA F1 column

Source checking is not independent reproduction.

Sources and history

Release 2026-09-16-d74d282221a9 · Record review: source checked

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Technical metadata and extraction receipts

Stable ID: lit-b3-005

areas
cells-tissues
tasks
Cross-platform scATAC cell-type annotation
printed value
0.6525
numeric value
0.6525
metric
F1
metric direction
unknown
unit
unitless
uncertainty
Not reported
source locator
Table 2, scLLMDA row, Ref: MosA1 / Q: WholeBrainA F1 column
review
method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:44:03.395850+00:00; notes: First reference/query block MosA1 to WholeBrainA, F1 second column in block; direction of transfer is part of protocol. Source check verifies central value and table context, not experiment reproduction or all metadata.; evidence: {"table_xml_id": "pcbi.1014226.t002", "row_cells": ["scLLMDA", "0.7228", "0.6525", "0.7691", "0.3993", "0.7114", "0.6253", "0.7044", "0.3630", "0.7012", "0.6490", "0.7583", "0.4580"], "selected_cell_zero_based": 2, "selected_cell_xml": "<td align=\"left\" rowspan=\"1\" colspan=\"1\">\n<bold>0.6525</bold>\n</td>", "caption": "Cell type annotation between snATAC-seq and sciATAC-seq platforms."}; artifact sha256: f1cdc7d54c6b2d491e4a74a44a1188a3679c555262c988e95a1c0de4614fe3cb; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13132462/fullTextXML
legacy id
lit-b3-005
legacy row
id: lit-b3-005; paper id: scatac-llmda-2026; domain id: cells-tissues; task: Cross-platform scATAC cell-type annotation; model: scLLMDA; model version: Not reported; dataset: MosA1 reference → WholeBrainA query; dataset version: Not reported; split: Not reported; metric: F1; value: 0.6525; unit: unitless; uncertainty: Not reported; protocol: Cross-platform reference-query cell-type annotation.; source locator: Table 2, scLLMDA row, Ref: MosA1 / Q: WholeBrainA F1 column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC13132462/; evaluation origin: author_reported; reviewed utc: 2026-09-15T23:29:32Z
missing metadata
model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract
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