Strengths and considerations
No source-reviewed explanatory claims are recorded here yet.
Configuration
Enformer (human not fine-tuned) (paper Table 3)
Enformer (human not fine-tuned) (paper Table 3). A comparator reported by the AlphaGenome authors; protocol pages specify the dataset and adaptation.
Sources (3)
AlphaGenome Nature 2026 supplementary comparison tables; AlphaGenome Nature 2026 supplementary methods; alphagenome: Journal full-text XML · 'Suppl Table 3 Track performance'!A20:N20; Supplementary Methods p.24, Benchmarking Against Enformer Track PredictionsAt a glance
Key specifications have not been extracted for this record. See the linked evaluation and sources for the reported setup.
limited source coverage · Automated source review, 2026-09-17. All specifications and missing details
Evaluations and results
Release 2026-09-17-d277315f7d76 · 5 evaluations · 5 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Enformer (human not fine-tuned) (paper Table 3): histone ChIP-seq track prediction at 128 bp Configuration: Enformer (human not fine-tuned) (paper Table 3)Protocol: histone ChIP-seq track prediction at 128 bp (AlphaGenome paper)Dataset subset: histone ChIP-seq track prediction at 128 bp: evaluated data subset Compare signals in aligned Enformer target bins with the dedicated head and the corresponding Enformer version. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.679 pearsonr Unit: correlation · Direction: higher Aggregation: Pearson correlation summarized over the relevant modality tracks. | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAlphaGenome Nature 2026 supplementary comparison tables · 'Suppl Table 3 Track performance'!J36 Source checking is not independent reproduction. |
| Enformer (human not fine-tuned) (paper Table 3): TF ChIP-seq track prediction at 128 bp Configuration: Enformer (human not fine-tuned) (paper Table 3)Protocol: TF ChIP-seq track prediction at 128 bp (AlphaGenome paper)Dataset subset: TF ChIP-seq track prediction at 128 bp: evaluated data subset Compare signals in aligned Enformer target bins with the dedicated head and the corresponding Enformer version. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.541 pearsonr Unit: correlation · Direction: higher Aggregation: Pearson correlation summarized over the relevant modality tracks. | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAlphaGenome Nature 2026 supplementary comparison tables · 'Suppl Table 3 Track performance'!J39 Source checking is not independent reproduction. |
| Enformer (human not fine-tuned) (paper Table 3): ATAC track prediction at 128 bp Configuration: Enformer (human not fine-tuned) (paper Table 3)Protocol: ATAC track prediction at 128 bp (AlphaGenome paper)Dataset subset: ATAC track prediction at 128 bp: evaluated data subset Compare signals in aligned Enformer target bins with the dedicated head and the corresponding Enformer version. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.674 pearsonr Unit: correlation · Direction: higher Aggregation: Pearson correlation summarized over the relevant modality tracks. | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAlphaGenome Nature 2026 supplementary comparison tables · 'Suppl Table 3 Track performance'!J33 Source checking is not independent reproduction. |
| Enformer (human not fine-tuned) (paper Table 3): DNase track prediction at 128 bp Configuration: Enformer (human not fine-tuned) (paper Table 3)Protocol: DNase track prediction at 128 bp (AlphaGenome paper)Dataset subset: DNase track prediction at 128 bp: evaluated data subset Compare signals in aligned Enformer target bins with the dedicated head and the corresponding Enformer version. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.830 pearsonr Unit: correlation · Direction: higher Aggregation: Pearson correlation summarized over the relevant modality tracks. | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAlphaGenome Nature 2026 supplementary comparison tables · 'Suppl Table 3 Track performance'!J27 Source checking is not independent reproduction. |
| Enformer (human not fine-tuned) (paper Table 3): CAGE track prediction at 128 bp Configuration: Enformer (human not fine-tuned) (paper Table 3)Protocol: CAGE track prediction at 128 bp (AlphaGenome paper)Dataset subset: CAGE track prediction at 128 bp: evaluated data subset Compare signals in aligned Enformer target bins with the dedicated head and the corresponding Enformer version. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.703 pearsonr Unit: correlation · Direction: higher Aggregation: Pearson correlation summarized over the relevant modality tracks. | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAlphaGenome Nature 2026 supplementary comparison tables · 'Suppl Table 3 Track performance'!J20 Source checking is not independent reproduction. |
How it works
How this comparator was evaluated
The source table identifies Enformer (human not fine-tuned). Compare signals in aligned Enformer target bins with the dedicated head and the corresponding Enformer version.
Sources (3)
AlphaGenome Nature 2026 supplementary comparison tables; AlphaGenome Nature 2026 supplementary methods; alphagenome: Journal full-text XML · 'Suppl Table 3 Track performance'!A20:N20; Supplementary Methods p.24, Benchmarking Against Enformer Track PredictionsStrengths and limitations
Limitations and conditions
- A table label does not establish identity with any other catalogue configuration bearing the same name.
Sources (3)
AlphaGenome Nature 2026 supplementary comparison tables; AlphaGenome Nature 2026 supplementary methods; alphagenome: Journal full-text XML · 'Suppl Table 3 Track performance'!A20:N20; Supplementary Methods p.24, Benchmarking Against Enformer Track Predictions
Profile review details
Primary-source transcription and separate automated source review. No human sign-off or independent experimental reproduction.
Stable record: alphagenome-2026-comparator-fa6b7704ab8966d4Specifications
Inputs, training, access and other details
Explanatory profile: limited source coverage · Automated source review, 2026-09-17. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
| Property | Description and evidence |
|---|---|
| Reported method | Enformer (human not fine-tuned)Sources (3)AlphaGenome Nature 2026 supplementary comparison tables; AlphaGenome Nature 2026 supplementary methods; alphagenome: Journal full-text XML · 'Suppl Table 3 Track performance'!A20:N20; Supplementary Methods p.24, Benchmarking Against Enformer Track Predictions |
| Exact checkpoint | Not established by the summary table; inspect the protocol and original implementation. · Needs further source reviewSources (3)AlphaGenome Nature 2026 supplementary comparison tables; AlphaGenome Nature 2026 supplementary methods; alphagenome: Journal full-text XML · 'Suppl Table 3 Track performance'!A20:N20; Supplementary Methods p.24, Benchmarking Against Enformer Track Predictions |
| Model type | Not extracted or verified for this record. |
| Inputs | Not extracted or verified for this record. |
| Outputs | Not extracted or verified for this record. |
| Parameters | Not extracted or verified for this record. |
| Training data | Not extracted or verified for this record. |
| Context limits | Not extracted or verified for this record. |
| Access | Not extracted or verified for this record. |
| Code licence | Not extracted or verified for this record. |
| Weights licence | Not extracted or verified for this record. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
15 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported method Enformer (human not fine-tuned) Individual claims | alphagenome: Journal full-text XML 'Suppl Table 3 Track performance'!A20:N20; Supplementary Methods p.24, Benchmarking Against Enformer Track Predictions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated source review. No human sign-off or independent experimental reproduction. Field: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| Reported method Enformer (human not fine-tuned) Individual claims | AlphaGenome Nature 2026 supplementary methods 'Suppl Table 3 Track performance'!A20:N20; Supplementary Methods p.24, Benchmarking Against Enformer Track Predictions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Supplement to Nature version of record, 28 January 2026; content hash pinned | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated source review. No human sign-off or independent experimental reproduction. Field: Source artifact SHA-256: Hash scope: SHA-256 of exact publisher PDF bytes Format: original_pdf |
| Reported method Enformer (human not fine-tuned) Individual claims | AlphaGenome Nature 2026 supplementary comparison tables 'Suppl Table 3 Track performance'!A20:N20; Supplementary Methods p.24, Benchmarking Against Enformer Track Predictions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature version of record, 28 January 2026 | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated source review. No human sign-off or independent experimental reproduction. Field: Source artifact SHA-256: Hash scope: SHA-256 of exact retrieved original artifact bytes Format: xlsx |
| Exact checkpoint Not established by the summary table; inspect the protocol and original implementation. Individual claims | alphagenome: Journal full-text XML 'Suppl Table 3 Track performance'!A20:N20; Supplementary Methods p.24, Benchmarking Against Enformer Track Predictions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied | unextracted automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated source review. No human sign-off or independent experimental reproduction. Field: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| Exact checkpoint Not established by the summary table; inspect the protocol and original implementation. Individual claims | AlphaGenome Nature 2026 supplementary methods 'Suppl Table 3 Track performance'!A20:N20; Supplementary Methods p.24, Benchmarking Against Enformer Track Predictions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Supplement to Nature version of record, 28 January 2026; content hash pinned | unextracted automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated source review. No human sign-off or independent experimental reproduction. Field: Source artifact SHA-256: Hash scope: SHA-256 of exact publisher PDF bytes Format: original_pdf |
| Exact checkpoint Not established by the summary table; inspect the protocol and original implementation. Individual claims | AlphaGenome Nature 2026 supplementary comparison tables 'Suppl Table 3 Track performance'!A20:N20; Supplementary Methods p.24, Benchmarking Against Enformer Track Predictions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature version of record, 28 January 2026 | unextracted automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated source review. No human sign-off or independent experimental reproduction. Field: Source artifact SHA-256: Hash scope: SHA-256 of exact retrieved original artifact bytes Format: xlsx |
| Limitation A table label does not establish identity with any other catalogue configuration bearing the same name. Individual claims | alphagenome: Journal full-text XML 'Suppl Table 3 Track performance'!A20:N20; Supplementary Methods p.24, Benchmarking Against Enformer Track Predictions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated source review. No human sign-off or independent experimental reproduction. Field: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| Limitation A table label does not establish identity with any other catalogue configuration bearing the same name. Individual claims | AlphaGenome Nature 2026 supplementary methods 'Suppl Table 3 Track performance'!A20:N20; Supplementary Methods p.24, Benchmarking Against Enformer Track Predictions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Supplement to Nature version of record, 28 January 2026; content hash pinned | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated source review. No human sign-off or independent experimental reproduction. Field: Source artifact SHA-256: Hash scope: SHA-256 of exact publisher PDF bytes Format: original_pdf |
| Limitation A table label does not establish identity with any other catalogue configuration bearing the same name. Individual claims | AlphaGenome Nature 2026 supplementary comparison tables 'Suppl Table 3 Track performance'!A20:N20; Supplementary Methods p.24, Benchmarking Against Enformer Track Predictions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature version of record, 28 January 2026 | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated source review. No human sign-off or independent experimental reproduction. Field: Source artifact SHA-256: Hash scope: SHA-256 of exact retrieved original artifact bytes Format: xlsx |
| How this comparator was evaluated The source table identifies Enformer (human not fine-tuned). Compare signals in aligned Enformer target bins with the dedicated head and the corresponding Enformer version. Individual claims | alphagenome: Journal full-text XML 'Suppl Table 3 Track performance'!A20:N20; Supplementary Methods p.24, Benchmarking Against Enformer Track Predictions Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated source review. No human sign-off or independent experimental reproduction. Field: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
Sources and history
Release 2026-09-17-d277315f7d76 · Record review: needs review
3 source records and release history
- AlphaGenome Nature 2026 supplementary comparison tables · Original source · Nature version of record, 28 January 2026
- AlphaGenome Nature 2026 supplementary methods · Original source · Supplement to Nature version of record, 28 January 2026; content hash pinned
- alphagenome: Journal full-text XML · Original source · Retrieved page snapshot; no immutable publisher revision supplied
Technical metadata and extraction receipts
Stable ID: alphagenome-2026-comparator-fa6b7704ab8966d4
- areas
- dna-genomes
- entity level
- method
- configuration type
- reported_configuration
- version
- Enformer (human not fine-tuned) (paper Table 3)
- legacy kinds
- model
- entity classification
- review date: 2026-09-17; rationale: This source-scoped entry preserves the method/configuration actually named in an evaluation. It is neither a global family identity nor proof of an immutable checkpoint; the linked evaluation retains adaptation, fitting and scoring details.; source ids: source-alphagenome-nature2026-tables; source-alphagenome-nature2026-supplementary-methods; evidence-official-56e5abfb5f12f1cd3b20; source locator: 'Suppl Table 3 Track performance'!A20:N20; Supplementary Methods p.24, Benchmarking Against Enformer Track Predictions; ambiguities: Configuration means the source-labelled evaluated identity. It does not establish missing checkpoint hashes, default settings or equivalence to same-named records in other papers.
Related records
- model: Enformer (human not fine-tuned) (paper Table 3): TF ChIP-seq track prediction at 128 bp
- model: Enformer (human not fine-tuned) (paper Table 3): DNase track prediction at 128 bp
- model: Enformer (human not fine-tuned) (paper Table 3): CAGE track prediction at 128 bp
- model: Enformer (human not fine-tuned) (paper Table 3): histone ChIP-seq track prediction at 128 bp
- model: Enformer (human not fine-tuned) (paper Table 3): ATAC track prediction at 128 bp