FLARE

Overview

Evaluated retrieval configuration from MSAlign Table 3; model-specific inputs and training are retained in the protocol.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

4 evaluations · 12 metric rows. Different protocols are not a single leaderboard.

Filter evaluations

Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: FLARE	Protocol: MSAlign molecular retrieval MassSpecGym formula split: formula supplied, R@1: MassSpecGym formula split retrieval with formula supplied Dataset subset: MassSpecGym formula split, formula supplied candidate pool (MSAlign molecular retrieval split)	31.8% recall_at_1 percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · source checked Methods, coverage and source FLARE on MSAlign molecular retrieval MassSpecGym formula split: formula supplied, R@1: MassSpecGym formula split retrieval with formula supplied Section 5.1 candidate retrieval: 256 mass-matched PubChem candidates per spectrum without formula; formula-conditioned methods can exploit true formula and MSAlign+Filter reduces the pool to about 100. Preserve the named source split; exact original split hashes remain unextracted. Aggregation: Not reported msalign: Primary paper PDF · Table 3, MassSpecGym formula split, row R@1, column 10 (FLARE)
Configuration: FLARE	Protocol: MSAlign molecular retrieval MassSpecGym formula split: formula supplied, R@20: MassSpecGym formula split retrieval with formula supplied Dataset subset: MassSpecGym formula split, formula supplied candidate pool (MSAlign molecular retrieval split)	84.1% recall_at_20 percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · source checked Methods, coverage and source FLARE on MSAlign molecular retrieval MassSpecGym formula split: formula supplied, R@20: MassSpecGym formula split retrieval with formula supplied Section 5.1 candidate retrieval: 256 mass-matched PubChem candidates per spectrum without formula; formula-conditioned methods can exploit true formula and MSAlign+Filter reduces the pool to about 100. Preserve the named source split; exact original split hashes remain unextracted. Aggregation: Not reported msalign: Primary paper PDF · Table 3, MassSpecGym formula split, row R@20, column 10 (FLARE)
Configuration: FLARE	Protocol: MSAlign molecular retrieval MassSpecGym formula split: formula supplied, R@5: MassSpecGym formula split retrieval with formula supplied Dataset subset: MassSpecGym formula split, formula supplied candidate pool (MSAlign molecular retrieval split)	64.5% recall_at_5 percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · source checked Methods, coverage and source FLARE on MSAlign molecular retrieval MassSpecGym formula split: formula supplied, R@5: MassSpecGym formula split retrieval with formula supplied Section 5.1 candidate retrieval: 256 mass-matched PubChem candidates per spectrum without formula; formula-conditioned methods can exploit true formula and MSAlign+Filter reduces the pool to about 100. Preserve the named source split; exact original split hashes remain unextracted. Aggregation: Not reported msalign: Primary paper PDF · Table 3, MassSpecGym formula split, row R@5, column 10 (FLARE)
Configuration: FLARE	Protocol: MSAlign molecular retrieval MassSpecGym MCES split: formula supplied, R@1: MassSpecGym MCES split retrieval with formula supplied Dataset subset: MassSpecGym MCES split, formula supplied candidate pool (MSAlign molecular retrieval split)	27.2% recall_at_1 percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · source checked Methods, coverage and source FLARE on MSAlign molecular retrieval MassSpecGym MCES split: formula supplied, R@1: MassSpecGym MCES split retrieval with formula supplied Section 5.1 candidate retrieval: 256 mass-matched PubChem candidates per spectrum without formula; formula-conditioned methods can exploit true formula and MSAlign+Filter reduces the pool to about 100. Preserve the named source split; exact original split hashes remain unextracted. Aggregation: Not reported msalign: Primary paper PDF · Table 3, MassSpecGym MCES split, row R@1, column 10 (FLARE)
Configuration: FLARE	Protocol: MSAlign molecular retrieval MassSpecGym MCES split: formula supplied, R@20: MassSpecGym MCES split retrieval with formula supplied Dataset subset: MassSpecGym MCES split, formula supplied candidate pool (MSAlign molecular retrieval split)	80.2% recall_at_20 percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · source checked Methods, coverage and source FLARE on MSAlign molecular retrieval MassSpecGym MCES split: formula supplied, R@20: MassSpecGym MCES split retrieval with formula supplied Section 5.1 candidate retrieval: 256 mass-matched PubChem candidates per spectrum without formula; formula-conditioned methods can exploit true formula and MSAlign+Filter reduces the pool to about 100. Preserve the named source split; exact original split hashes remain unextracted. Aggregation: Not reported msalign: Primary paper PDF · Table 3, MassSpecGym MCES split, row R@20, column 10 (FLARE)
Configuration: FLARE	Protocol: MSAlign molecular retrieval MassSpecGym MCES split: formula supplied, R@5: MassSpecGym MCES split retrieval with formula supplied Dataset subset: MassSpecGym MCES split, formula supplied candidate pool (MSAlign molecular retrieval split)	53.8% recall_at_5 percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · source checked Methods, coverage and source FLARE on MSAlign molecular retrieval MassSpecGym MCES split: formula supplied, R@5: MassSpecGym MCES split retrieval with formula supplied Section 5.1 candidate retrieval: 256 mass-matched PubChem candidates per spectrum without formula; formula-conditioned methods can exploit true formula and MSAlign+Filter reduces the pool to about 100. Preserve the named source split; exact original split hashes remain unextracted. Aggregation: Not reported msalign: Primary paper PDF · Table 3, MassSpecGym MCES split, row R@5, column 10 (FLARE)
Configuration: FLARE	Protocol: MSAlign molecular retrieval NPLIB1: formula supplied, R@1: NPLIB1 retrieval with formula supplied Dataset subset: NPLIB1, formula supplied candidate pool (MSAlign molecular retrieval split)	19.6% recall_at_1 percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · source checked Methods, coverage and source FLARE on MSAlign molecular retrieval NPLIB1: formula supplied, R@1: NPLIB1 retrieval with formula supplied Section 5.1 candidate retrieval: 256 mass-matched PubChem candidates per spectrum without formula; formula-conditioned methods can exploit true formula and MSAlign+Filter reduces the pool to about 100. Preserve the named source split; exact original split hashes remain unextracted. Aggregation: Not reported msalign: Primary paper PDF · Table 3, NPLIB1, row R@1, column 10 (FLARE)
Configuration: FLARE	Protocol: MSAlign molecular retrieval NPLIB1: formula supplied, R@20: NPLIB1 retrieval with formula supplied Dataset subset: NPLIB1, formula supplied candidate pool (MSAlign molecular retrieval split)	76.6% recall_at_20 percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · source checked Methods, coverage and source FLARE on MSAlign molecular retrieval NPLIB1: formula supplied, R@20: NPLIB1 retrieval with formula supplied Section 5.1 candidate retrieval: 256 mass-matched PubChem candidates per spectrum without formula; formula-conditioned methods can exploit true formula and MSAlign+Filter reduces the pool to about 100. Preserve the named source split; exact original split hashes remain unextracted. Aggregation: Not reported msalign: Primary paper PDF · Table 3, NPLIB1, row R@20, column 10 (FLARE)
Configuration: FLARE	Protocol: MSAlign molecular retrieval NPLIB1: formula supplied, R@5: NPLIB1 retrieval with formula supplied Dataset subset: NPLIB1, formula supplied candidate pool (MSAlign molecular retrieval split)	50.8% recall_at_5 percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · source checked Methods, coverage and source FLARE on MSAlign molecular retrieval NPLIB1: formula supplied, R@5: NPLIB1 retrieval with formula supplied Section 5.1 candidate retrieval: 256 mass-matched PubChem candidates per spectrum without formula; formula-conditioned methods can exploit true formula and MSAlign+Filter reduces the pool to about 100. Preserve the named source split; exact original split hashes remain unextracted. Aggregation: Not reported msalign: Primary paper PDF · Table 3, NPLIB1, row R@5, column 10 (FLARE)
Configuration: FLARE	Protocol: MSAlign molecular retrieval Spectraverse: formula supplied, R@1: Spectraverse retrieval with formula supplied Dataset subset: Spectraverse, formula supplied candidate pool (MSAlign molecular retrieval split)	12.3% recall_at_1 percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · source checked Methods, coverage and source FLARE on MSAlign molecular retrieval Spectraverse: formula supplied, R@1: Spectraverse retrieval with formula supplied Section 5.1 candidate retrieval: 256 mass-matched PubChem candidates per spectrum without formula; formula-conditioned methods can exploit true formula and MSAlign+Filter reduces the pool to about 100. Preserve the named source split; exact original split hashes remain unextracted. Aggregation: Not reported msalign: Primary paper PDF · Table 3, Spectraverse, row R@1, column 10 (FLARE)
Configuration: FLARE	Protocol: MSAlign molecular retrieval Spectraverse: formula supplied, R@20: Spectraverse retrieval with formula supplied Dataset subset: Spectraverse, formula supplied candidate pool (MSAlign molecular retrieval split)	62.5% recall_at_20 percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · source checked Methods, coverage and source FLARE on MSAlign molecular retrieval Spectraverse: formula supplied, R@20: Spectraverse retrieval with formula supplied Section 5.1 candidate retrieval: 256 mass-matched PubChem candidates per spectrum without formula; formula-conditioned methods can exploit true formula and MSAlign+Filter reduces the pool to about 100. Preserve the named source split; exact original split hashes remain unextracted. Aggregation: Not reported msalign: Primary paper PDF · Table 3, Spectraverse, row R@20, column 10 (FLARE)
Configuration: FLARE	Protocol: MSAlign molecular retrieval Spectraverse: formula supplied, R@5: Spectraverse retrieval with formula supplied Dataset subset: Spectraverse, formula supplied candidate pool (MSAlign molecular retrieval split)	33.7% recall_at_5 percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · source checked Methods, coverage and source FLARE on MSAlign molecular retrieval Spectraverse: formula supplied, R@5: Spectraverse retrieval with formula supplied Section 5.1 candidate retrieval: 256 mass-matched PubChem candidates per spectrum without formula; formula-conditioned methods can exploit true formula and MSAlign+Filter reduces the pool to about 100. Preserve the named source split; exact original split hashes remain unextracted. Aggregation: Not reported msalign: Primary paper PDF · Table 3, Spectraverse, row R@5, column 10 (FLARE)

Source checking is not independent reproduction. Release 2026-09-23-2b89723c6dd9.

Use this model

How it works, versions and access

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

0 evidence rows matching the loaded filters