DPLM (650M)
Protein model evaluated by the ProteinBench authors under their harness.
Overview
Protein model evaluated by the ProteinBench authors under their harness.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
Release 2026-09-17-134cd1815de8 · 20 evaluations · 20 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| DPLM (650M) on ProteinBench SEQ-LENGTH-100-DIVERSITY-MAX-CLUST: length 100, Diversity Max Clust. Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-100-DIVERSITY-MAX-CLUST: length 100, Diversity Max Clust.Dataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.80 max-clust Unit: score · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Diversity Max Clust. ↑) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-100-DIVERSITY-PAIRWISE-TM: length 100, Diversity pairwise TM Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-100-DIVERSITY-PAIRWISE-TM: length 100, Diversity pairwise TMDataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.50 ± 0.20 pairwise-tm Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 0.20 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Diversity pairwise TM ↓) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-100-NOVELTY-MAX-TM: length 100, Novelty Max TM Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-100-NOVELTY-MAX-TM: length 100, Novelty Max TMDataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.74 ± 0.10 max-tm Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 0.10 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Novelty Max TM ↓) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-100-QUALITY-PLDDT: length 100, Quality pLDDT Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-100-QUALITY-PLDDT: length 100, Quality pLDDTDataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 85.38 ± 14.20 plddt Unit: score · Direction: higher | Uncertainty: type: standard deviation; value: 14.20 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Quality pLDDT ↑) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-100-QUALITY-PPL: length 100, Quality ppl Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-100-QUALITY-PPL: length 100, Quality pplDataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 6.21 ± 3.10 ppl Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 3.10 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Quality ppl ↓) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-200-DIVERSITY-MAX-CLUST: length 200, Diversity Max Clust. Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-200-DIVERSITY-MAX-CLUST: length 200, Diversity Max Clust.Dataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.70 max-clust Unit: score · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Diversity Max Clust. ↑) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-200-DIVERSITY-PAIRWISE-TM: length 200, Diversity pairwise TM Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-200-DIVERSITY-PAIRWISE-TM: length 200, Diversity pairwise TMDataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.54 ± 0.24 pairwise-tm Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 0.24 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Diversity pairwise TM ↓) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-200-NOVELTY-MAX-TM: length 200, Novelty Max TM Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-200-NOVELTY-MAX-TM: length 200, Novelty Max TMDataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.91 ± 0.004 max-tm Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 0.004 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Novelty Max TM ↓) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-200-QUALITY-PLDDT: length 200, Quality pLDDT Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-200-QUALITY-PLDDT: length 200, Quality pLDDTDataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 93.54 ± 3.73 plddt Unit: score · Direction: higher | Uncertainty: type: standard deviation; value: 3.73 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Quality pLDDT↑) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-200-QUALITY-PPL: length 200, Quality ppl Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-200-QUALITY-PPL: length 200, Quality pplDataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 4.61 ± 2.63 ppl Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 2.63 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Quality ppl ↓) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-300-DIVERSITY-MAX-CLUST: length 300, Diversity Max Clust. Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-300-DIVERSITY-MAX-CLUST: length 300, Diversity Max Clust.Dataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.63 max-clust Unit: score · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Diversity Max Clust. ↑) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-300-DIVERSITY-PAIRWISE-TM: length 300, Diversity pairwise TM Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-300-DIVERSITY-PAIRWISE-TM: length 300, Diversity pairwise TMDataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.57 ± 0.25 pairwise-tm Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 0.25 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Diversity pairwise TM ↓) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-300-NOVELTY-MAX-TM: length 300, Novelty Max TM Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-300-NOVELTY-MAX-TM: length 300, Novelty Max TMDataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.91 ± 0.01 max-tm Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 0.01 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Novelty Max TM ↓) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-300-QUALITY-PLDDT: length 300, Quality pLDDT Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-300-QUALITY-PLDDT: length 300, Quality pLDDTDataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 93.07 ± 5.77 plddt Unit: score · Direction: higher | Uncertainty: type: standard deviation; value: 5.77 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Quality pLDDT ↑) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-300-QUALITY-PPL: length 300, Quality ppl Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-300-QUALITY-PPL: length 300, Quality pplDataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 3.47 ± 1.44 ppl Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 1.44 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Quality ppl ↓) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-500-DIVERSITY-MAX-CLUST: length 500, Diversity Max Clust. Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-500-DIVERSITY-MAX-CLUST: length 500, Diversity Max Clust.Dataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.85 max-clust Unit: score · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Diversity Max Clust. ↑) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-500-DIVERSITY-PAIRWISE-TM: length 500, Diversity pairwise TM Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-500-DIVERSITY-PAIRWISE-TM: length 500, Diversity pairwise TMDataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.43 ± 0.18 pairwise-tm Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 0.18 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Diversity pairwise TM ↓) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-500-NOVELTY-MAX-TM: length 500, Novelty Max TM Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-500-NOVELTY-MAX-TM: length 500, Novelty Max TMDataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.85 ± 0.04 max-tm Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 0.04 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Novelty Max TM ↓) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-500-QUALITY-PLDDT: length 500, Quality pLDDT Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-500-QUALITY-PLDDT: length 500, Quality pLDDTDataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 87.73 ± 11.61 plddt Unit: score · Direction: higher | Uncertainty: type: standard deviation; value: 11.61 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Quality pLDDT↑) Source checking is not independent reproduction. |
| DPLM (650M) on ProteinBench SEQ-LENGTH-500-QUALITY-PPL: length 500, Quality ppl Configuration: DPLM (650M)Task: ProteinBench SEQ-LENGTH-500-QUALITY-PPL: length 500, Quality pplDataset subset: Generated sequences at fixed lengths (ProteinBench split) Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 3.33 ± 1.8 ppl Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 1.8 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Quality ppl ↓) Source checking is not independent reproduction. |
Evidence table
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Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
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Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- proteinbench primary benchmark evidence · Original source · 2409.06744v1
Technical metadata and extraction receipts
Stable ID: proteinbench-method-dplm-650m
- areas
- proteins-complexes
- source locator
- Table 4, row(DPLM (650M))
- missing metadata
- checkpoint revision: unreported; parameters: unextracted
Related records
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-100-DIVERSITY-MAX-CLUST: length 100, Diversity Max Clust.
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-100-DIVERSITY-PAIRWISE-TM: length 100, Diversity pairwise TM
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-100-NOVELTY-MAX-TM: length 100, Novelty Max TM
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-100-QUALITY-PLDDT: length 100, Quality pLDDT
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-100-QUALITY-PPL: length 100, Quality ppl
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-200-DIVERSITY-MAX-CLUST: length 200, Diversity Max Clust.
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-200-DIVERSITY-PAIRWISE-TM: length 200, Diversity pairwise TM
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-200-NOVELTY-MAX-TM: length 200, Novelty Max TM
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-200-QUALITY-PLDDT: length 200, Quality pLDDT
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-200-QUALITY-PPL: length 200, Quality ppl
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-300-DIVERSITY-MAX-CLUST: length 300, Diversity Max Clust.
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-300-DIVERSITY-PAIRWISE-TM: length 300, Diversity pairwise TM
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-300-NOVELTY-MAX-TM: length 300, Novelty Max TM
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-300-QUALITY-PLDDT: length 300, Quality pLDDT
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-300-QUALITY-PPL: length 300, Quality ppl
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-500-DIVERSITY-MAX-CLUST: length 500, Diversity Max Clust.
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-500-DIVERSITY-PAIRWISE-TM: length 500, Diversity pairwise TM
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-500-NOVELTY-MAX-TM: length 500, Novelty Max TM
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-500-QUALITY-PLDDT: length 500, Quality pLDDT
- model: DPLM (650M) on ProteinBench SEQ-LENGTH-500-QUALITY-PPL: length 500, Quality ppl