OHE ESM-1v
Supervised fitness predictor evaluated by the ProteinGym authors. The leading term is the input representation the paper's model type column gives.
Overview
Supervised fitness predictor evaluated by the ProteinGym authors. The leading term is the input representation the paper's model type column gives.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
Release 2026-09-17-134cd1815de8 · 8 evaluations · 8 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| OHE ESM-1v on ProteinGym SUP-SUB-MSE-AVG: Supervised substitutions, average over splits, MSE Configuration: OHE ESM-1vTask: ProteinGym SUP-SUB-MSE-AVG: Supervised substitutions, average over splits, MSEDataset subset: ProteinGym substitution DMS assays (ProteinGym split) Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.897 mse Unit: error · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(ESM-1v), column(Supervised substitutions, average over splits, MSE) Source checking is not independent reproduction. |
| OHE ESM-1v on ProteinGym SUP-SUB-MSE-CONTIG: Supervised substitutions, contiguous split, MSE Configuration: OHE ESM-1vTask: ProteinGym SUP-SUB-MSE-CONTIG: Supervised substitutions, contiguous split, MSEDataset subset: ProteinGym substitution DMS assays (ProteinGym split) Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.977 mse Unit: error · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(ESM-1v), column(Supervised substitutions, contiguous split, MSE) Source checking is not independent reproduction. |
| OHE ESM-1v on ProteinGym SUP-SUB-MSE-MOD: Supervised substitutions, modulo split, MSE Configuration: OHE ESM-1vTask: ProteinGym SUP-SUB-MSE-MOD: Supervised substitutions, modulo split, MSEDataset subset: ProteinGym substitution DMS assays (ProteinGym split) Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.949 mse Unit: error · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(ESM-1v), column(Supervised substitutions, modulo split, MSE) Source checking is not independent reproduction. |
| OHE ESM-1v on ProteinGym SUP-SUB-MSE-RAND: Supervised substitutions, random split, MSE Configuration: OHE ESM-1vTask: ProteinGym SUP-SUB-MSE-RAND: Supervised substitutions, random split, MSEDataset subset: ProteinGym substitution DMS assays (ProteinGym split) Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.764 mse Unit: error · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(ESM-1v), column(Supervised substitutions, random split, MSE) Source checking is not independent reproduction. |
| OHE ESM-1v on ProteinGym SUP-SUB-SPEARMAN-AVG: Supervised substitutions, average over splits, Spearman Configuration: OHE ESM-1vTask: ProteinGym SUP-SUB-SPEARMAN-AVG: Supervised substitutions, average over splits, SpearmanDataset subset: ProteinGym substitution DMS assays (ProteinGym split) Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.417 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(ESM-1v), column(Supervised substitutions, average over splits, Spearman) Source checking is not independent reproduction. |
| OHE ESM-1v on ProteinGym SUP-SUB-SPEARMAN-CONTIG: Supervised substitutions, contiguous split, Spearman Configuration: OHE ESM-1vTask: ProteinGym SUP-SUB-SPEARMAN-CONTIG: Supervised substitutions, contiguous split, SpearmanDataset subset: ProteinGym substitution DMS assays (ProteinGym split) Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.367 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(ESM-1v), column(Supervised substitutions, contiguous split, Spearman) Source checking is not independent reproduction. |
| OHE ESM-1v on ProteinGym SUP-SUB-SPEARMAN-MOD: Supervised substitutions, modulo split, Spearman Configuration: OHE ESM-1vTask: ProteinGym SUP-SUB-SPEARMAN-MOD: Supervised substitutions, modulo split, SpearmanDataset subset: ProteinGym substitution DMS assays (ProteinGym split) Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.368 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(ESM-1v), column(Supervised substitutions, modulo split, Spearman) Source checking is not independent reproduction. |
| OHE ESM-1v on ProteinGym SUP-SUB-SPEARMAN-RAND: Supervised substitutions, random split, Spearman Configuration: OHE ESM-1vTask: ProteinGym SUP-SUB-SPEARMAN-RAND: Supervised substitutions, random split, SpearmanDataset subset: ProteinGym substitution DMS assays (ProteinGym split) Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.514 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(ESM-1v), column(Supervised substitutions, random split, Spearman) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
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Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: proteingym-method-ohe-esm-1v
- areas
- proteins-complexes
- source locator
- Table 3, row(ESM-1v)
- missing metadata
- checkpoint revision: unreported; parameters: unextracted
Related records
- model: OHE ESM-1v on ProteinGym SUP-SUB-MSE-AVG: Supervised substitutions, average over splits, MSE
- model: OHE ESM-1v on ProteinGym SUP-SUB-MSE-CONTIG: Supervised substitutions, contiguous split, MSE
- model: OHE ESM-1v on ProteinGym SUP-SUB-MSE-MOD: Supervised substitutions, modulo split, MSE
- model: OHE ESM-1v on ProteinGym SUP-SUB-MSE-RAND: Supervised substitutions, random split, MSE
- model: OHE ESM-1v on ProteinGym SUP-SUB-SPEARMAN-AVG: Supervised substitutions, average over splits, Spearman
- model: OHE ESM-1v on ProteinGym SUP-SUB-SPEARMAN-CONTIG: Supervised substitutions, contiguous split, Spearman
- model: OHE ESM-1v on ProteinGym SUP-SUB-SPEARMAN-MOD: Supervised substitutions, modulo split, Spearman
- model: OHE ESM-1v on ProteinGym SUP-SUB-SPEARMAN-RAND: Supervised substitutions, random split, Spearman