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UltraFold

Source-labelled CASP15 submission configuration quoted in the RhoFold+ comparison; not a newly executed independent evaluation.

6 evaluations · 12 metric rows

Overview

Source-labelled CASP15 submission configuration quoted in the RhoFold+ comparison; not a newly executed independent evaluation.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

6 evaluations · 12 metric rows. Different protocols are not a single leaderboard.

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Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: UltraFoldProtocol: RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD
Dataset subset: CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
6.43 Å rmsd
angstrom · lower

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · source checked
Methods, coverage and source

UltraFold on RhoFold+ 2024 CASP15 natural RNA comparison R1107-rmsd: R1107: RMSD

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!B6; method fig2hi!A6; target fig2hi!B1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: UltraFoldProtocol: RhoFold+ 2024 CASP15 natural RNA comparison R1107-sum_z_gdt_ts_tm_score: R1107: Sum of Z-scores for GDT-TS and TM-score
Dataset subset: CASP15 natural RNA target R1107 (RhoFold+ 2024 CASP15 natural RNA comparison split)
2.33 sum_z_gdt_ts_tm_score
dimensionless · higher

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · source checked
Methods, coverage and source

UltraFold on RhoFold+ 2024 CASP15 natural RNA comparison R1107-sum_z_gdt_ts_tm_score: R1107: Sum of Z-scores for GDT-TS and TM-score

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!H6; method fig2hi!A6; target fig2hi!H1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: UltraFoldProtocol: RhoFold+ 2024 CASP15 natural RNA comparison R1108-rmsd: R1108: RMSD
Dataset subset: CASP15 natural RNA target R1108 (RhoFold+ 2024 CASP15 natural RNA comparison split)
6.41 Å rmsd
angstrom · lower

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · source checked
Methods, coverage and source

UltraFold on RhoFold+ 2024 CASP15 natural RNA comparison R1108-rmsd: R1108: RMSD

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!C6; method fig2hi!A6; target fig2hi!C1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: UltraFoldProtocol: RhoFold+ 2024 CASP15 natural RNA comparison R1108-sum_z_gdt_ts_tm_score: R1108: Sum of Z-scores for GDT-TS and TM-score
Dataset subset: CASP15 natural RNA target R1108 (RhoFold+ 2024 CASP15 natural RNA comparison split)
2.16 sum_z_gdt_ts_tm_score
dimensionless · higher

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · source checked
Methods, coverage and source

UltraFold on RhoFold+ 2024 CASP15 natural RNA comparison R1108-sum_z_gdt_ts_tm_score: R1108: Sum of Z-scores for GDT-TS and TM-score

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!I6; method fig2hi!A6; target fig2hi!I1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: UltraFoldProtocol: RhoFold+ 2024 CASP15 natural RNA comparison R1116-rmsd: R1116: RMSD
Dataset subset: CASP15 natural RNA target R1116 (RhoFold+ 2024 CASP15 natural RNA comparison split)
7.94 Å rmsd
angstrom · lower

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · source checked
Methods, coverage and source

UltraFold on RhoFold+ 2024 CASP15 natural RNA comparison R1116-rmsd: R1116: RMSD

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!D6; method fig2hi!A6; target fig2hi!D1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: UltraFoldProtocol: RhoFold+ 2024 CASP15 natural RNA comparison R1116-sum_z_gdt_ts_tm_score: R1116: Sum of Z-scores for GDT-TS and TM-score
Dataset subset: CASP15 natural RNA target R1116 (RhoFold+ 2024 CASP15 natural RNA comparison split)
1.1000000000000001 sum_z_gdt_ts_tm_score
dimensionless · higher

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · source checked
Methods, coverage and source

UltraFold on RhoFold+ 2024 CASP15 natural RNA comparison R1116-sum_z_gdt_ts_tm_score: R1116: Sum of Z-scores for GDT-TS and TM-score

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!J6; method fig2hi!A6; target fig2hi!J1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: UltraFoldProtocol: RhoFold+ 2024 CASP15 natural RNA comparison R1117-rmsd: R1117: RMSD
Dataset subset: CASP15 natural RNA target R1117 (RhoFold+ 2024 CASP15 natural RNA comparison split)
4.03 Å rmsd
angstrom · lower

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · source checked
Methods, coverage and source

UltraFold on RhoFold+ 2024 CASP15 natural RNA comparison R1117-rmsd: R1117: RMSD

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!E6; method fig2hi!A6; target fig2hi!E1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: UltraFoldProtocol: RhoFold+ 2024 CASP15 natural RNA comparison R1117-sum_z_gdt_ts_tm_score: R1117: Sum of Z-scores for GDT-TS and TM-score
Dataset subset: CASP15 natural RNA target R1117 (RhoFold+ 2024 CASP15 natural RNA comparison split)
0.52 sum_z_gdt_ts_tm_score
dimensionless · higher

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · source checked
Methods, coverage and source

UltraFold on RhoFold+ 2024 CASP15 natural RNA comparison R1117-sum_z_gdt_ts_tm_score: R1117: Sum of Z-scores for GDT-TS and TM-score

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!K6; method fig2hi!A6; target fig2hi!K1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: UltraFoldProtocol: RhoFold+ 2024 CASP15 natural RNA comparison R1149-rmsd: R1149: RMSD
Dataset subset: CASP15 natural RNA target R1149 (RhoFold+ 2024 CASP15 natural RNA comparison split)
8.68 Å rmsd
angstrom · lower

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · source checked
Methods, coverage and source

UltraFold on RhoFold+ 2024 CASP15 natural RNA comparison R1149-rmsd: R1149: RMSD

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!F6; method fig2hi!A6; target fig2hi!F1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: UltraFoldProtocol: RhoFold+ 2024 CASP15 natural RNA comparison R1149-sum_z_gdt_ts_tm_score: R1149: Sum of Z-scores for GDT-TS and TM-score
Dataset subset: CASP15 natural RNA target R1149 (RhoFold+ 2024 CASP15 natural RNA comparison split)
3.5 sum_z_gdt_ts_tm_score
dimensionless · higher

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · source checked
Methods, coverage and source

UltraFold on RhoFold+ 2024 CASP15 natural RNA comparison R1149-sum_z_gdt_ts_tm_score: R1149: Sum of Z-scores for GDT-TS and TM-score

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!L6; method fig2hi!A6; target fig2hi!L1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: UltraFoldProtocol: RhoFold+ 2024 CASP15 natural RNA comparison R1156-rmsd: R1156: RMSD
Dataset subset: CASP15 natural RNA target R1156 (RhoFold+ 2024 CASP15 natural RNA comparison split)
15.7 Å rmsd
angstrom · lower

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · source checked
Methods, coverage and source

UltraFold on RhoFold+ 2024 CASP15 natural RNA comparison R1156-rmsd: R1156: RMSD

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!G6; method fig2hi!A6; target fig2hi!G1; Fig. 2h caption; XML Par13–15 and Par51
Configuration: UltraFoldProtocol: RhoFold+ 2024 CASP15 natural RNA comparison R1156-sum_z_gdt_ts_tm_score: R1156: Sum of Z-scores for GDT-TS and TM-score
Dataset subset: CASP15 natural RNA target R1156 (RhoFold+ 2024 CASP15 natural RNA comparison split)
2.35 sum_z_gdt_ts_tm_score
dimensionless · higher

Uncertainty: Not reported

Coverage: unit: CASP15 natural RNA target; scored: 1; eligible: 1; note: Per-cell target count; source retains up to five candidate structures, not five independent evaluation targets.

Result quoted from another source · source checked
Methods, coverage and source

UltraFold on RhoFold+ 2024 CASP15 natural RNA comparison R1156-sum_z_gdt_ts_tm_score: R1156: Sum of Z-scores for GDT-TS and TM-score

Retrospective evaluation of six CASP15 natural single-chain RNA targets; each task retains one named target. Artificially designed targets and RNA-protein complexes excluded. RNA sequence inputs without ions or other molecules. Paper Par13 selects the highest-performing of five candidates; Par51 describes five sampled-MSA runs for RhoFold+, one AlphaFold3 server run yielding five models, and five CASP15 models for the other methods. Figure 2h reports RMSD and sum of Z-scores for GDT-TS and TM-score. Metric-specific winning candidate identity, exact scoring-tool revision and RMSD atom selection remain unextracted. No target pooling or score recomputation.

Aggregation: Source-reported selected candidate for one target; no cross-target aggregation.

RhoFold+ Nature Methods 2024: Source Data Figure 2h · fig2hi!M6; method fig2hi!A6; target fig2hi!M1; Fig. 2h caption; XML Par13–15 and Par51

Source checking is not independent reproduction. Release 2026-09-23-2b89723c6dd9.

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Evidence

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Claims, original sources and review scope · Release 2026-09-23-2b89723c6dd9
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Release 2026-09-23-2b89723c6dd9 · Record review: source checked

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Technical metadata and extraction receipts

Stable ID: rhofold-2024-casp15-natural-method-ultrafold

areas
rna-transcriptomics
source locator
fig2hi!A6; Figure 2h; primary XML Par13–15 and Par51
missing metadata
checkpoint revision: unreported; parameters: unextracted
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