real_test PPI held-out evaluation
Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage.
Dataset and evaluation context
A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.
Evaluation results
Release 2026-09-17-d277315f7d76 · 3 evaluations · 18 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| ESM2_DPM: real_test PPI held-out evaluation Configuration: ESM2_DPMProtocol: real_test PPI held-out evaluation (protein-protein interaction prediction)Dataset: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.5733 MCC Unit: dimensionless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_DPM, column MCC; XML row4 column6 Source checking is not independent reproduction. |
| 0.7703 Accuracy Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_DPM, column Accuracy; XML row4 column2 Source checking is not independent reproduction. |
| 0.7767 AUC Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_DPM, column AUC; XML row4 column5 Source checking is not independent reproduction. |
| 0.7023 Precision Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_DPM, column Precision; XML row4 column7 Source checking is not independent reproduction. |
| 0.9358 Recall Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_DPM, column Recall; XML row4 column3 Source checking is not independent reproduction. |
| 0.8024 F1 Score Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_DPM, column F1 Score; XML row4 column4 Source checking is not independent reproduction. |
| ESM2_AMPS: real_test PPI held-out evaluation Configuration: ESM2_AMPSProtocol: real_test PPI held-out evaluation (protein-protein interaction prediction)Dataset: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.7932 AUC Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMPS, column AUC; XML row2 column5 Source checking is not independent reproduction. |
| 0.7123 Precision Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMPS, column Precision; XML row2 column7 Source checking is not independent reproduction. |
| 0.8045 F1 Score Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMPS, column F1 Score; XML row2 column4 Source checking is not independent reproduction. |
| 0.7761 Accuracy Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMPS, column Accuracy; XML row2 column2 Source checking is not independent reproduction. |
| 0.5785 MCC Unit: dimensionless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMPS, column MCC; XML row2 column6 Source checking is not independent reproduction. |
| 0.9242 Recall Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMPS, column Recall; XML row2 column3 Source checking is not independent reproduction. |
| ESM2_AMP_CSE: real_test PPI held-out evaluation Configuration: ESM2_AMP_CSEProtocol: real_test PPI held-out evaluation (protein-protein interaction prediction)Dataset: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.5628 MCC Unit: dimensionless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMP_CSE, column MCC; XML row3 column6 Source checking is not independent reproduction. |
| 0.7981 F1 Score Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMP_CSE, column F1 Score; XML row3 column4 Source checking is not independent reproduction. |
| 0.8064 AUC Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMP_CSE, column AUC; XML row3 column5 Source checking is not independent reproduction. |
| 0.7665 Accuracy Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMP_CSE, column Accuracy; XML row3 column2 Source checking is not independent reproduction. |
| 0.9258 Recall Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMP_CSE, column Recall; XML row3 column3 Source checking is not independent reproduction. |
| 0.7014 Precision Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMP_CSE, column Precision; XML row3 column7 Source checking is not independent reproduction. |
Evidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
6 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.reported_population No value recorded Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | missing or unspecified No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 3: Accuracy, real_test PPI held-out evaluation Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.split Paper real_test dataset; Table 3. Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.subset real_test PPI held-out evaluation Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage. Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name real_test PPI held-out evaluation Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-d277315f7d76 · Record review: needs review
- ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Original source · version of record
Technical metadata and extraction receipts
Stable ID: paper-dataset-a825ad55756b359150
- areas
- molecular-interactions
- tasks
- protein-protein interaction prediction
- split
- Paper real_test dataset; Table 3.
- subset
- real_test PPI held-out evaluation
- reported population
- Not reported
- source locator
- Table 3: Accuracy, real_test PPI held-out evaluation
- missing metadata
- manifest: unextracted; scored count: unreported
- entity classification
- review date: 2026-09-17; rationale: This record identifies a biological data collection or source-labelled evaluation cohort. Keep its dataset identity; split, assay, taxonomic level, candidate restrictions and comparison context remain attributes rather than automatically becoming new entity kinds.; source ids: part2-esm2-amp-2025; source locator: Table 3: Accuracy, real_test PPI held-out evaluation; ambiguities: None recorded