ESM2_AMP_CSE: real_test PPI held-out evaluation
Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3.
Evaluation procedure
Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3.
- Configuration
- ESM2_AMP_CSE
- Protocol
- real_test PPI held-out evaluation (protein-protein interaction prediction)
- Dataset
- real_test PPI held-out evaluation
- origin
- Author-reported evaluation
- configuration
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- protocol id
- paper-protocol-1edc32c80b0223fef1
- dataset version
- Not reported
- split
- Paper real_test dataset; Table 3.
- subset
- real_test PPI held-out evaluation
- population
- Not reported
- aggregation
- Not reported
- inputs
- Not reported
- adaptation
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- budget
- Not reported
- metric implementation
- Not reported
Metadata review: needs review. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-d277315f7d76 · 1 evaluation · 6 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| ESM2_AMP_CSE: real_test PPI held-out evaluation Configuration: ESM2_AMP_CSEProtocol: real_test PPI held-out evaluation (protein-protein interaction prediction)Dataset: real_test PPI held-out evaluation Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.5628 MCC Unit: dimensionless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMP_CSE, column MCC; XML row3 column6 Source checking is not independent reproduction. |
| 0.7981 F1 Score Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMP_CSE, column F1 Score; XML row3 column4 Source checking is not independent reproduction. |
| 0.8064 AUC Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMP_CSE, column AUC; XML row3 column5 Source checking is not independent reproduction. |
| 0.7665 Accuracy Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMP_CSE, column Accuracy; XML row3 column2 Source checking is not independent reproduction. |
| 0.9258 Recall Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMP_CSE, column Recall; XML row3 column3 Source checking is not independent reproduction. |
| 0.7014 Precision Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 3, row ESM2_AMP_CSE, column Precision; XML row3 column7 Source checking is not independent reproduction. |
Evidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
19 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Paper-specific evaluated pipeline; exact checkpoint not inferred from label Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.aggregation No value recorded Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.budget No value recorded Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.dataset_version No value recorded Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.inputs No value recorded Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.metric_implementation No value recorded Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.population No value recorded Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id paper-protocol-1edc32c80b0223fef1 Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.split Paper real_test dataset; Table 3. Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.subset real_test PPI held-out evaluation Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 3: Accuracy, real_test PPI held-out evaluation Version: version of record | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-d277315f7d76 · Record review: needs review
- ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Original source · version of record
Technical metadata and extraction receipts
Stable ID: paper-evaluation-6d9a2dcb4f6b9eefdb
- areas
- molecular-interactions
- tasks
- protein-protein interaction prediction
- origin
- author_reported
- protocol
- Complete trained PPI pipelines evaluated on real_test. Paper real_test dataset; Table 3.
- version
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- comparison
- protocol id: paper-protocol-1edc32c80b0223fef1; dataset version: Not reported; split: Paper real_test dataset; Table 3.; subset: real_test PPI held-out evaluation; population: Not reported; aggregation: Not reported; inputs: Not reported; adaptation: Paper-specific evaluated pipeline; exact checkpoint not inferred from label; budget: Not reported; metric implementation: Not reported
- source locator
- Table 3: Accuracy, real_test PPI held-out evaluation
- missing metadata
- checkpoint revision: unextracted; budget: unreported; split manifest: unextracted
Related records
- model: ESM2_AMP_CSE
- benchmark: real_test PPI held-out evaluation (protein-protein interaction prediction)
- dataset: real_test PPI held-out evaluation
- evaluation: ESM2_AMP_CSE: MCC on real_test PPI held-out evaluation
- evaluation: ESM2_AMP_CSE: F1 Score on real_test PPI held-out evaluation
- evaluation: ESM2_AMP_CSE: AUC on real_test PPI held-out evaluation
- evaluation: ESM2_AMP_CSE: Accuracy on real_test PPI held-out evaluation
- evaluation: ESM2_AMP_CSE: Recall on real_test PPI held-out evaluation
- evaluation: ESM2_AMP_CSE: Precision on real_test PPI held-out evaluation