promoter strength test sequences: tobacco leaves: A. thaliana (PGB promoter strength split)
Reported test subset of the original promoter or terminator study. The AgroNT Methods state that the original training and test datasets were used. Exact split manifest and scored count remain unextracted.
Evaluation results
2 evaluations · 2 metric rows. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: AgroNT: promoter strength, tobacco leaves | Protocol: PGB promoter strength tobacco leaves: A. thaliana: promoter strength prediction Dataset subset: promoter strength test sequences: tobacco leaves: A. thaliana (PGB promoter strength split) | 0.62 r2 coefficient of determination · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · source checkedMethods, coverage and source170 bp assay sequences; original study train/test datasets, as described in Methods Sec21. R² is scored separately by assay system and sequence class. Fitted model checkpoint, seeds and scored counts are not established here. Aggregation: Not reported AgroNT Figure 3e source table · Figures/Fig3_panele.txt, line 5 (data row 4), column R2; Species=A. thaliana; Model=Tobacco model; Type=AgroNT |
| Configuration: CNN (Jores et al.): promoter strength, tobacco leaves | Protocol: PGB promoter strength tobacco leaves: A. thaliana: promoter strength prediction Dataset subset: promoter strength test sequences: tobacco leaves: A. thaliana (PGB promoter strength split) | 0.57 r2 coefficient of determination · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · source checkedMethods, coverage and source170 bp assay sequences; original study train/test datasets, as described in Methods Sec21. R² is scored separately by assay system and sequence class. Fitted model checkpoint, seeds and scored counts are not established here. Aggregation: Not reported AgroNT Figure 3e source table · Figures/Fig3_panele.txt, line 11 (data row 10), column R2; Species=A. thaliana; Model=Tobacco model; Type=CNN (Jores et al.) |
Source checking is not independent reproduction. Release 2026-09-23-2b89723c6dd9.
Subset and evaluation context
This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.
Evidence
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Evidence table
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4 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| description Reported test subset of the original promoter or terminator study. The AgroNT Methods state that the original training and test datasets were used. Exact split manifest and scored count remain unextracted. Context-only references | AgroNT Figure 3e source table No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 78ec8156c2ffb3e5475277fdb7eb603294224e53 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description Reported test subset of the original promoter or terminator study. The AgroNT Methods state that the original training and test datasets were used. Exact split manifest and scored count remain unextracted. Context-only references | AgroNT: published methods and Figure 3 No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, 2024-07-09; retrieved XML snapshot | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name promoter strength test sequences: tobacco leaves: A. thaliana (PGB promoter strength split) Context-only references | AgroNT Figure 3e source table No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 78ec8156c2ffb3e5475277fdb7eb603294224e53 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name promoter strength test sequences: tobacco leaves: A. thaliana (PGB promoter strength split) Context-only references | AgroNT: published methods and Figure 3 No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, 2024-07-09; retrieved XML snapshot | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
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Release 2026-09-23-2b89723c6dd9 · Record review: source checked
2 source records and release history
- AgroNT Figure 3e source table · Original source · 78ec8156c2ffb3e5475277fdb7eb603294224e53
- AgroNT: published methods and Figure 3 · Original source · Version of record, 2024-07-09; retrieved XML snapshot
Technical metadata and extraction receipts
Stable ID: agront-2024-fig3e-dataset-promoter-strength-test-sequences-tobacco-leaves-a-thaliana
- areas
- genomics
- missing metadata
- version: unreported; url: unextracted