StructureImpute (BEACON split)
The split of StructureImpute that the BEACON authors evaluated on, named in their Table 1. The upstream dataset release is not catalogued here, so no claim is made that this matches the original splits.
Subset and evaluation context
This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.
Evaluation results
Release 2026-09-17-1a18ca2c038a · 17 evaluations · 17 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| BEACON-B on BEACON SSI: Structure score imputation Configuration: BEACON-BTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 38.78(0.18)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.18 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B),column(SSI) Source checking is not independent reproduction. |
| BEACON-B512 on BEACON SSI: Structure score imputation Configuration: BEACON-B512Task: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 39.13(0.08)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.08 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B512),column(SSI) Source checking is not independent reproduction. |
| CNN on BEACON SSI: Structure score imputation Method: CNNTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 34.36(0.12)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.12 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(CNN),column(SSI) Source checking is not independent reproduction. |
| LSTM on BEACON SSI: Structure score imputation Method: LSTMTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 35.44(1.13)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.13 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(LSTM),column(SSI) Source checking is not independent reproduction. |
| ResNet on BEACON SSI: Structure score imputation Method: ResNetTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 37.74(0.16)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.16 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(ResNet),column(SSI) Source checking is not independent reproduction. |
| RNA-FM on BEACON SSI: Structure score imputation Configuration: RNA-FMTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 42.36(0.24)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.24 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-FM),column(SSI) Source checking is not independent reproduction. |
| RNA-MSM on BEACON SSI: Structure score imputation Configuration: RNA-MSMTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 39.22(0.23)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.23 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-MSM),column(SSI) Source checking is not independent reproduction. |
| RNABERT on BEACON SSI: Structure score imputation Configuration: RNABERTTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 31.62(0.64)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.64 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNABERT),column(SSI) Source checking is not independent reproduction. |
| Splice-H510 on BEACON SSI: Structure score imputation Configuration: Splice-H510Task: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 38.91(0.07)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.07 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-H510),column(SSI) Source checking is not independent reproduction. |
| Splice-MS1024 on BEACON SSI: Structure score imputation Configuration: Splice-MS1024Task: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 39.22(0.02)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.02 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS1024),column(SSI) Source checking is not independent reproduction. |
| Splice-MS510 on BEACON SSI: Structure score imputation Configuration: Splice-MS510Task: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 38.58(0.50)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.50 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS510),column(SSI) Source checking is not independent reproduction. |
| UTR-LM-MRL on BEACON SSI: Structure score imputation Configuration: UTR-LM-MRLTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 39.52(0.36)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.36 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-MRL),column(SSI) Source checking is not independent reproduction. |
| UTR-LM-TE&EL on BEACON SSI: Structure score imputation Configuration: UTR-LM-TE&ELTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 40.15(0.11)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.11 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-TE&EL),column(SSI) Source checking is not independent reproduction. |
| UTRBERT-3mer on BEACON SSI: Structure score imputation Configuration: UTRBERT-3merTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 34.31(0.00)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.00 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-3mer),column(SSI) Source checking is not independent reproduction. |
| UTRBERT-4mer on BEACON SSI: Structure score imputation Configuration: UTRBERT-4merTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 33.22(0.00)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.00 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-4mer),column(SSI) Source checking is not independent reproduction. |
| UTRBERT-5mer on BEACON SSI: Structure score imputation Configuration: UTRBERT-5merTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 31.27(0.00)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.00 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-5mer),column(SSI) Source checking is not independent reproduction. |
| UTRBERT-6mer on BEACON SSI: Structure score imputation Configuration: UTRBERT-6merTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 29.93(0.17)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.17 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-6mer),column(SSI) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
3 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.source_locator Table1,p.6,column(Source/Venue) Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table1,p.6,column(Source/Venue) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description The split of StructureImpute that the BEACON authors evaluated on, named in their Table 1. The upstream dataset release is not catalogued here, so no claim is made that this matches the original splits. Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table1,p.6,column(Source/Venue) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name StructureImpute (BEACON split) Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table1,p.6,column(Source/Venue) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-09-17-1a18ca2c038a · Record review: source checked
1 source records and release history
- BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Original source · v2, 12 December 2024
Technical metadata and extraction receipts
Stable ID: beacon-dataset-structureimpute
- areas
- rna-transcriptomes
- source locator
- Table1,p.6,column(Source/Venue)
- missing metadata
- version: unreported; url: unextracted
Related records
- dataset: BEACON-B on BEACON SSI: Structure score imputation
- dataset: BEACON-B512 on BEACON SSI: Structure score imputation
- dataset: CNN on BEACON SSI: Structure score imputation
- dataset: LSTM on BEACON SSI: Structure score imputation
- dataset: ResNet on BEACON SSI: Structure score imputation
- dataset: RNA-FM on BEACON SSI: Structure score imputation
- dataset: RNA-MSM on BEACON SSI: Structure score imputation
- dataset: RNABERT on BEACON SSI: Structure score imputation
- dataset: Splice-H510 on BEACON SSI: Structure score imputation
- dataset: Splice-MS1024 on BEACON SSI: Structure score imputation
- dataset: Splice-MS510 on BEACON SSI: Structure score imputation
- dataset: UTR-LM-MRL on BEACON SSI: Structure score imputation
- dataset: UTR-LM-TE&EL on BEACON SSI: Structure score imputation
- dataset: UTRBERT-3mer on BEACON SSI: Structure score imputation
- dataset: UTRBERT-4mer on BEACON SSI: Structure score imputation
- dataset: UTRBERT-5mer on BEACON SSI: Structure score imputation
- dataset: UTRBERT-6mer on BEACON SSI: Structure score imputation