BEACON SSI: Structure score imputation
Structure score imputation. Reg at nucleotide level, scored with R2. Dataset StructureImpute; train/validation/test 14,049/1,756/3,095.
Overview
Structure score imputation. Reg at nucleotide level, scored with R2. Dataset StructureImpute; train/validation/test 14,049/1,756/3,095.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- BEACON-B on BEACON SSI: Structure score imputation
- BEACON-B512 on BEACON SSI: Structure score imputation
- CNN on BEACON SSI: Structure score imputation
- LSTM on BEACON SSI: Structure score imputation
- ResNet on BEACON SSI: Structure score imputation
- RNA-FM on BEACON SSI: Structure score imputation
- RNA-MSM on BEACON SSI: Structure score imputation
- RNABERT on BEACON SSI: Structure score imputation
- Splice-H510 on BEACON SSI: Structure score imputation
- Splice-MS1024 on BEACON SSI: Structure score imputation
- Splice-MS510 on BEACON SSI: Structure score imputation
- UTR-LM-MRL on BEACON SSI: Structure score imputation
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Published comparisons
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.
BEACON SSI: Structure score imputation
r2 (percent) · Higher values are better for this metric.
Every method in BEACON Table 3 on Structure score imputation, scored with R2 on StructureImpute with the split 14,049/1,756/3,095.
- CNN · Method · Author-reported evaluation34.36(0.12)
- ResNet · Method · Author-reported evaluation37.74(0.16)
- LSTM · Method · Author-reported evaluation35.44(1.13)
- RNA-FM · Configuration · Author-reported evaluation42.36(0.24)
- RNABERT · Configuration · Author-reported evaluation31.62(0.64)
- RNA-MSM · Configuration · Author-reported evaluation39.22(0.23)
- Splice-H510 · Configuration · Author-reported evaluation38.91(0.07)
- Splice-MS510 · Configuration · Author-reported evaluation38.58(0.50)
- Splice-MS1024 · Configuration · Author-reported evaluation39.22(0.02)
- UTR-LM-MRL · Configuration · Author-reported evaluation39.52(0.36)
- UTR-LM-TE&EL · Configuration · Author-reported evaluation40.15(0.11)
- UTRBERT-3mer · Configuration · Author-reported evaluation34.31(0.00)
- UTRBERT-4mer · Configuration · Author-reported evaluation33.22(0.00)
- UTRBERT-5mer · Configuration · Author-reported evaluation31.27(0.00)
- UTRBERT-6mer · Configuration · Author-reported evaluation29.93(0.17)
- BEACON-B · Configuration · Author-reported evaluation38.78(0.18)
- BEACON-B512 · Configuration · Author-reported evaluation39.13(0.08)
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,column(SSI)Values, uncertainty and evidence
| Tested entity | Printed value | Uncertainty | Evidence |
|---|---|---|---|
| CNN · Method | 34.36(0.12) percent | type: standard_deviation; value: 0.12 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(CNN),column(SSI) |
| ResNet · Method | 37.74(0.16) percent | type: standard_deviation; value: 0.16 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(ResNet),column(SSI) |
| LSTM · Method | 35.44(1.13) percent | type: standard_deviation; value: 1.13 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(LSTM),column(SSI) |
| RNA-FM · Configuration | 42.36(0.24) percent | type: standard_deviation; value: 0.24 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-FM),column(SSI) |
| RNABERT · Configuration | 31.62(0.64) percent | type: standard_deviation; value: 0.64 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNABERT),column(SSI) |
| RNA-MSM · Configuration | 39.22(0.23) percent | type: standard_deviation; value: 0.23 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-MSM),column(SSI) |
| Splice-H510 · Configuration | 38.91(0.07) percent | type: standard_deviation; value: 0.07 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-H510),column(SSI) |
| Splice-MS510 · Configuration | 38.58(0.50) percent | type: standard_deviation; value: 0.50 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS510),column(SSI) |
| Splice-MS1024 · Configuration | 39.22(0.02) percent | type: standard_deviation; value: 0.02 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS1024),column(SSI) |
| UTR-LM-MRL · Configuration | 39.52(0.36) percent | type: standard_deviation; value: 0.36 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-MRL),column(SSI) |
| UTR-LM-TE&EL · Configuration | 40.15(0.11) percent | type: standard_deviation; value: 0.11 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-TE&EL),column(SSI) |
| UTRBERT-3mer · Configuration | 34.31(0.00) percent | type: standard_deviation; value: 0.00 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-3mer),column(SSI) |
| UTRBERT-4mer · Configuration | 33.22(0.00) percent | type: standard_deviation; value: 0.00 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-4mer),column(SSI) |
| UTRBERT-5mer · Configuration | 31.27(0.00) percent | type: standard_deviation; value: 0.00 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-5mer),column(SSI) |
| UTRBERT-6mer · Configuration | 29.93(0.17) percent | type: standard_deviation; value: 0.17 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-6mer),column(SSI) |
| BEACON-B · Configuration | 38.78(0.18) percent | type: standard_deviation; value: 0.18 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B),column(SSI) |
| BEACON-B512 · Configuration | 39.13(0.08) percent | type: standard_deviation; value: 0.08 | Author-reported evaluation · source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B512),column(SSI) |
Scope and limitations
- Author-reported numbers, source checked but not independently reproduced.
- The Literature SOTA row is excluded: those numbers come from other papers under their own protocols.
- Metrics differ between tasks, so these figures cannot be averaged into one RNA score.
Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-17-1a18ca2c038a · 17 evaluations · 17 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| BEACON-B on BEACON SSI: Structure score imputation Configuration: BEACON-BTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 38.78(0.18)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.18 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B),column(SSI) Source checking is not independent reproduction. |
| BEACON-B512 on BEACON SSI: Structure score imputation Configuration: BEACON-B512Task: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 39.13(0.08)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.08 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B512),column(SSI) Source checking is not independent reproduction. |
| CNN on BEACON SSI: Structure score imputation Method: CNNTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 34.36(0.12)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.12 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(CNN),column(SSI) Source checking is not independent reproduction. |
| LSTM on BEACON SSI: Structure score imputation Method: LSTMTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 35.44(1.13)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.13 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(LSTM),column(SSI) Source checking is not independent reproduction. |
| ResNet on BEACON SSI: Structure score imputation Method: ResNetTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 37.74(0.16)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.16 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(ResNet),column(SSI) Source checking is not independent reproduction. |
| RNA-FM on BEACON SSI: Structure score imputation Configuration: RNA-FMTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 42.36(0.24)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.24 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-FM),column(SSI) Source checking is not independent reproduction. |
| RNA-MSM on BEACON SSI: Structure score imputation Configuration: RNA-MSMTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 39.22(0.23)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.23 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-MSM),column(SSI) Source checking is not independent reproduction. |
| RNABERT on BEACON SSI: Structure score imputation Configuration: RNABERTTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 31.62(0.64)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.64 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNABERT),column(SSI) Source checking is not independent reproduction. |
| Splice-H510 on BEACON SSI: Structure score imputation Configuration: Splice-H510Task: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 38.91(0.07)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.07 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-H510),column(SSI) Source checking is not independent reproduction. |
| Splice-MS1024 on BEACON SSI: Structure score imputation Configuration: Splice-MS1024Task: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 39.22(0.02)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.02 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS1024),column(SSI) Source checking is not independent reproduction. |
| Splice-MS510 on BEACON SSI: Structure score imputation Configuration: Splice-MS510Task: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 38.58(0.50)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.50 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS510),column(SSI) Source checking is not independent reproduction. |
| UTR-LM-MRL on BEACON SSI: Structure score imputation Configuration: UTR-LM-MRLTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 39.52(0.36)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.36 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-MRL),column(SSI) Source checking is not independent reproduction. |
| UTR-LM-TE&EL on BEACON SSI: Structure score imputation Configuration: UTR-LM-TE&ELTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 40.15(0.11)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.11 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-TE&EL),column(SSI) Source checking is not independent reproduction. |
| UTRBERT-3mer on BEACON SSI: Structure score imputation Configuration: UTRBERT-3merTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 34.31(0.00)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.00 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-3mer),column(SSI) Source checking is not independent reproduction. |
| UTRBERT-4mer on BEACON SSI: Structure score imputation Configuration: UTRBERT-4merTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 33.22(0.00)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.00 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-4mer),column(SSI) Source checking is not independent reproduction. |
| UTRBERT-5mer on BEACON SSI: Structure score imputation Configuration: UTRBERT-5merTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 31.27(0.00)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.00 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-5mer),column(SSI) Source checking is not independent reproduction. |
| UTRBERT-6mer on BEACON SSI: Structure score imputation Configuration: UTRBERT-6merTask: BEACON SSI: Structure score imputationDataset subset: StructureImpute (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 14,049/1,756/3,095; dataset StructureImpute. Author-reported evaluation · Evaluation metadata: source checked | ||
| 29.93(0.17)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.17 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-6mer),column(SSI) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-beacon Individual claims | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table1,p.6,row(SSI) Version: v2, 12 December 2024 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: beacon-association-ssi Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-09-17-1a18ca2c038a · Record review: source checked
1 source records and release history
- BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Original source · v2, 12 December 2024
Technical metadata and extraction receipts
Stable ID: beacon-task-ssi
- areas
- rna-transcriptomes
- tasks
- Structure score imputation
- metric
- R2
- metric direction
- higher
- task type
- Reg
- rna level
- Nucleotide
- dataset
- StructureImpute
- splits
- 14,049/1,756/3,095
- source locator
- Table1,p.6,row(SSI)
- comparison panels
- id: beacon-panel-ssi; title: BEACON SSI: Structure score imputation; protocol id: beacon-task-ssi; dataset id: beacon-dataset-structureimpute; metric: r2; unit: percent; direction: higher; result ids: beacon-result-cnn-ssi-r2; beacon-result-resnet-ssi-r2; beacon-result-lstm-ssi-r2; beacon-result-rna-fm-ssi-r2; beacon-result-rnabert-ssi-r2; beacon-result-rna-msm-ssi-r2; beacon-result-splice-h510-ssi-r2; beacon-result-splice-ms510-ssi-r2; beacon-result-splice-ms1024-ssi-r2; beacon-result-utr-lm-mrl-ssi-r2; beacon-result-utr-lm-te-and-el-ssi-r2; beacon-result-utrbert-3mer-ssi-r2; beacon-result-utrbert-4mer-ssi-r2; beacon-result-utrbert-5mer-ssi-r2; beacon-result-utrbert-6mer-ssi-r2; beacon-result-beacon-b-ssi-r2; beacon-result-beacon-b512-ssi-r2; source ids: source-beacon-arxiv-2406-10391; source locator: Table3,p.8,column(SSI); context: Every method in BEACON Table 3 on Structure score imputation, scored with R2 on StructureImpute with the split 14,049/1,756/3,095.; caveats: Author-reported numbers, source checked but not independently reproduced.; The Literature SOTA row is excluded: those numbers come from other papers under their own protocols.; Metrics differ between tasks, so these figures cannot be averaged into one RNA score.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: BEACON
- subject: BEACON SSI: part of discovery-benchmark-beacon
- benchmark: BEACON-B on BEACON SSI: Structure score imputation
- benchmark: BEACON-B512 on BEACON SSI: Structure score imputation
- benchmark: CNN on BEACON SSI: Structure score imputation
- benchmark: LSTM on BEACON SSI: Structure score imputation
- benchmark: ResNet on BEACON SSI: Structure score imputation
- benchmark: RNA-FM on BEACON SSI: Structure score imputation
- benchmark: RNA-MSM on BEACON SSI: Structure score imputation
- benchmark: RNABERT on BEACON SSI: Structure score imputation
- benchmark: Splice-H510 on BEACON SSI: Structure score imputation
- benchmark: Splice-MS1024 on BEACON SSI: Structure score imputation
- benchmark: Splice-MS510 on BEACON SSI: Structure score imputation
- benchmark: UTR-LM-MRL on BEACON SSI: Structure score imputation
- benchmark: UTR-LM-TE&EL on BEACON SSI: Structure score imputation
- benchmark: UTRBERT-3mer on BEACON SSI: Structure score imputation
- benchmark: UTRBERT-4mer on BEACON SSI: Structure score imputation
- benchmark: UTRBERT-5mer on BEACON SSI: Structure score imputation
- benchmark: UTRBERT-6mer on BEACON SSI: Structure score imputation